Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0876 ATGGCAGGCATATCTTTCGGACGCTTCGATGATTCTTTGAACGCAGCCTCCATTAAGGCCTATGTTGCTGAGTTCATATCCACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTTCGGGAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGTTTGGTAGCAATTGCAGTATGCCATGCTTTTGCTCTCTTTGTGGCGGTCGCTGTTGGTGCCAACATCTCAGGTGGTCATGTTAACCCTGCTGTCACCTTCGGATTGGCTCTCGGTGGCCAGATCAGCATCCTCACCGGTATCTTCTACTGGATTGCTCAGCTTCTTGGATCCATTGTTGCATGCTTGCTCCTCAAGTTCGTCACTGGAGGCTTGGCGATCCCCATCCATGGTGTAGCTGCAGGAGTTGGGGTTGCTGAAGGAGTAGTGATGGAGATCATCATCACTTTCGCATTGGTCTACACAGTCTACGCCACTGCAGCCGACCCCAAGAAGGGATCATTGGGCACAATCGCACCCATTGCCATTGGATTCATCGTCGGAGCCAACATCTTGGCAGCCGGACCATTCTCCGGTGGATCAATGAACCCTGCTCGCTCCTTTGGCCCCGCCGTGGTCAGCGGCAACTTCACCGGCAACTGGATCTACTGGGTTGGACCCTTGTTCGGCGGTGGCCTCGCTGGTCTCATCTACGGCAATGTGTTCATGAACACTGAGTACGCTCCTCTCGCTAGTGAATTCTGA 747 0.5288 MAGISFGRFDDSLNAASIKAYVAEFISTLLFVFAGVGSAIAFGKLTSDAALDPAGLVAIAVCHAFALFVAVAVGANISGGHVNPAVTFGLALGGQISILTGIFYWIAQLLGSIVACLLLKFVTGGLAIPIHGVAAGVGVAEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFTGNWIYWVGPLFGGGLAGLIYGNVFMNTEYAPLASEF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0876 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 SUPERFAMILY Aquaporin-like 17 239 IPR023271 -
Lele42g0876 248 Pfam Major intrinsic protein 16 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Lele42g0876 248 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Lele42g0876 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Lele42g0876 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0876 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0876 Lele-ChrLele42 21515368 21517089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0876 1 246 Major Intrinsic Protein MIP AT3G16240 82.186 4.17e-144 401