Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0863 ATGTCCAACCATCCTCATCACTACTTGCCCTCCCCTGCTCTCTCTCTCAGCCTTGCGGGAATCTTTGGCCTTGATGATGGGGTGGCGCCGTCGAGCAACGCTCAGATGGAAGGGGCCGGCGGGGAGGAGGGAAGAGGAGGAGGCGGGCGGCGAGACAACACGGTTCATCACGAGATTAGCAGCGAGAGCTCTGGTGGGCTGATCGGGAGATCGTCTAGATCCGACGAAGGCTTCGAAGAAGGCCATGACGATGTTGAAGGTGACGGAGACAAGAACAAGAGCAAGAAAAAGAGGAAGAGATATCATAGGCACACTGCTGAGCAGATCAGAGAAATGGAAGCACTATTCAGAGAGTCGCCTCATCCTGATGAGAACCAGAGACAACAACTTAGCAAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCTATACAAGAGCGTCACGAGAATTTATTGCTAAAGTCAGAAATGGATAAACTTAGAGAGGAAAATGAAGCCTTGAGGGGGATCATAAACAAAGCTTGTTGCTCCAACTGTGGAGTCGCCGCCATTTCCTCAGATCCCCCCATGCCTCCTCAACTACCCCAACTCCGTCTAGAAAATGCCAAACTCAAATCTGAGATCGAGAAGCTTCGAACAGCAGTAGAGAAGGGCCCCCCGGGGTCGACAATGTCACCTTCGAGATCTTTGGGAAATGAGCAAATGGAGAACAGGAGCTGTATGGAAATTTACAGTGGAATTTTCGGACTTGAGAAGACAAAGGTGATGGAGCTAGTTAAGGAAGCCATGGAAGAGCTGATAAAGATGGCAACTATGGAGGAACCATTATGGGTTCGTAGCGTTGAGTCTGGTCGCCAAATACTAAATTACGATGAATATTTAAAACAGTTCAAAGTTGAACACTCGTCGTCGTCGTCAAAGAAATTATCAGCGTACTCCATCGAAGCCTCGAGAGAAACTGGGGTTGTTCTTCTGGATCTTCCTCGTCTTCTTCAAATCTTCTTGGACGTGAATCAATGGAAGGAAATGTTTCCGAGTTTAATATCGAAGGCAGCCATTGTTGATGTTATTTGTAGTGGCGAAGGTGCTAACAGGGATGGTGCGGTGCAACTGATGTTTAGCGAGTTGCAAATGCTGACACCAATGGTGGGGAGTAGAGAAGTATATTTTATGAGGGACCAAACTCCACTTACTCAGTGGCAAGTGAGAACTGGAGGTGAGCACGTGCAGTCTATCGTCAACTTGTCCAAAGGGAAACATAGAGGCAACGCCGTAACCATCCAGGAAGTAAAATCAAAAGAAGACGACAGTAACAGTACGTGGATTCTACAAGACAGCAGCACGAGTACGTACGAATCAACTGTGGTGTATGCTCCGGTGGACATCACTCGCATGCAGTCAGTGATCACGGGATGCGACTCCAGTGATGTACCGATTCTGCCGTCGGGATTCTCCGTCGTCCCCGACGGAATGGAGGCCATAAGACCATTGATGATGGCTTCTTCATCAAAACAAGGACAAGAAGAAGAAGAAGAGGAAGAAGAAAAGAGCACAGAAGGAGGTTCTCTGCTTACCATGGCGATGCAGGTCCTCGTCAGCACTTCTCCTTCTGCTAAGCTAACACAGGACTCTGTTGAATCAGTCAATTCTCTCGTGTCTTGTACTTTGAGAAATATCAGAACAAGTTTACAGTGTGAGGATAGTTAA 1740 0.4776 MSNHPHHYLPSPALSLSLAGIFGLDDGVAPSSNAQMEGAGGEEGRGGGGRRDNTVHHEISSESSGGLIGRSSRSDEGFEEGHDDVEGDGDKNKSKKKRKRYHRHTAEQIREMEALFRESPHPDENQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENLLLKSEMDKLREENEALRGIINKACCSNCGVAAISSDPPMPPQLPQLRLENAKLKSEIEKLRTAVEKGPPGSTMSPSRSLGNEQMENRSCMEIYSGIFGLEKTKVMELVKEAMEELIKMATMEEPLWVRSVESGRQILNYDEYLKQFKVEHSSSSSKKLSAYSIEASRETGVVLLDLPRLLQIFLDVNQWKEMFPSLISKAAIVDVICSGEGANRDGAVQLMFSELQMLTPMVGSREVYFMRDQTPLTQWQVRTGGEHVQSIVNLSKGKHRGNAVTIQEVKSKEDDSNSTWILQDSSTSTYESTVVYAPVDITRMQSVITGCDSSDVPILPSGFSVVPDGMEAIRPLMMASSSKQGQEEEEEEEEKSTEGGSLLTMAMQVLVSTSPSAKLTQDSVESVNSLVSCTLRNIRTSLQCEDS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0863 579 Pfam Homeodomain 98 153 IPR001356 GO:0003677
Lele42g0863 579 Coils Coil 154 181 - -
Lele42g0863 579 ProSiteProfiles START domain profile. 259 468 IPR002913 GO:0008289
Lele42g0863 579 MobiDBLite consensus disorder prediction 44 58 - -
Lele42g0863 579 MobiDBLite consensus disorder prediction 511 532 - -
Lele42g0863 579 SUPERFAMILY Bet v1-like 261 501 - -
Lele42g0863 579 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 96 403 IPR042160 -
Lele42g0863 579 Pfam START domain 269 403 IPR002913 GO:0008289
Lele42g0863 579 SMART START_1 268 488 IPR002913 GO:0008289
Lele42g0863 579 Coils Coil 205 225 - -
Lele42g0863 579 CDD homeodomain 102 153 IPR001356 GO:0003677
Lele42g0863 579 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Lele42g0863 579 SUPERFAMILY Homeodomain-like 88 156 IPR009057 -
Lele42g0863 579 SMART HOX_1 96 159 IPR001356 GO:0003677
Lele42g0863 579 MobiDBLite consensus disorder prediction 73 93 - -
Lele42g0863 579 MobiDBLite consensus disorder prediction 26 108 - -
Lele42g0863 579 FunFam Homeobox-leucine zipper protein HDG1 85 171 - -
Lele42g0863 579 Gene3D - 84 166 - -
Lele42g0863 579 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0863 Lele-ChrLele42 21436147 21441946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0863 401 578 Homeobox Transcription Factor Family AT1G79840 53.371 7.98e-52 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele42g0863 START 7.1e-21 CL0209