Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0850 ATGCCCTCCTGCGGCGAGCCCTCCACCGCCACCACAGCCCACGCTGCCCCAGCTGCCTGCAGATGCGCCTCAAGACACCCCGTAGAAGGGTCCGAAGATGGCGCGAAAGAGGACGCAATCTGGGGATTGGGAAAAGACCTTTGCAACTGGAACAAGGTACCTGGAAACCCCAAGAACAATGATTTGAATGAGGCAACAGATTGGGACTTTGAGGATGATGATGAATTTTGGGAATTGGGTACTCAACCTGCAACAACAAGAGTAAACATGTGCACAGGAAATTACTCCTTTGTACTTCTTGGCTTCGTTTCGAGCTTTGGATATGGCGAAACCCCTCCTCAACTCAACCTCGGAGATCACTGTAACCCTTTTTCTTCATCTGGGTGCTCTACCATTGGCACAGAAACCAAATATTGTCAACAACAAGGGATCAAGGTGATGCTCTCTCTTGGAGGAGTATCTACGAATTACTATTTATCTTCATCTGATGATGCTCTAAATCTTTCTGATTACTTATGGAACAATTTCTTAGGCGGAAGCTCTTCTTCTTCACGACCACTTGGAGGTGCCATATTAGATGGCATAGATTTTAATATACAGACATCTATCAAACACTTGGAGGACCTTGCCCGTTACCTCAAGTCACATAACACTGATAGCCAAAAACTGTACTTATCTGCAGCACCTGAATGCCCATTTCTTGATGCTTTTCTTGGTACTGCCCTTAATACAGGCCTTTTTGACTATGTCTGGGTACAATTCTTCGAGAACCCTCCCTGCGCCTATTCAGAAGCCAATCCTAATGCGTTTGTCAATGCATGGAACCAGTCGGCGACATCATTAAATGGGTCGAAAATATTCCTGAGGTTGACAACATCGGAATTAGCAATCGGATATATTCCTGCTGATTTGTTAATATCCAAGGTACTTCCCACTGTAAAGAAGTCACCTAACTATGAAGGTGTAACGTTGGAGTCAAGGAAACATGACAGTGGTTTTGAAGAGCGTTTTGGTTACATGTCCACTGATAGTATTAAGGTTTACGAAGGTGGGGATCTTGGTGGGCAGTGTTGTGAGACCATATGCTGGAACAATTGTTCTTGTGAGGCTTATGATCCAGTGAGTGGGTGCCATATATGGCTTAAAGGAACCAGGTTCACTGATTATGCAGCTGGGTCAAAAGGACTGTCAATTTATATTGTTAGGCACAAAGTGGGAGCAAGCCTAGCATTACTTCTGATCTGCTACTTATGCTATGCCTCAGTGAGAAAATACAAAGCAGAAGTGGAAAGGAGAACGAAGCAAAAGAAGATATTACATGAAATTGGAGGCAATGCAATGATTTCTATGGGTATGGAAAAGCCAGAAGGAACAAGAAACATGGGAAGGAAAGAAATGAGGTCGAAATATTCAGTTTTGATAGCATTGTGGCTGCCACAAACAATTTCTCAGATTCTAACAAGCTTTGAGAGGGTGGTTTTGGTCCTGTATATAAGTGGCTATATGGCTCCAGAGTACGCGATCAATGGTGCCGTTTCAATCAAAACAGACATATTCAACTTTGGCGTGTTGCTAATAGAGATTCTTAGTGGCAAAAAGAATAACAATCGATTTGATTTATATCGTCCTCTTAACCAAATAGGATATAACAAAGTGCAGAGAGCTATTCATATTGGCCTGTTTTGCGTACAAGATCAAGCAAAAGAGAGGCCTTCCATGTTAGACGTAATTTCTTTTCTATCAAATAATTCTATTCAACTTGCTCAAGCAAAGCAGCCTGCATACTTTATTGGTGACGTTGAGGAAGAAGGATCAGAGTTACATAACATGAGGCAACAATATTATTCCATAAATTGTGCGACAGTTTCTAATCTAGAAGATGCAATCAAAAGGAATGCACTGAAGGCATTGCTGACTTCTTTATTTGCACAGATATTCAAAACTAAAAAGTTTAAAGTAGATGATGATGTGACTTTGCATGTGCAGATGCTGATAATAACGCCAATAGTAGTGCGGCCATTGATGAGGCTGGTGAGAGCTCTGATGACAGAACCAGTAGGGAGCTTGACGACGATGTTGTACAGTGGAAATCGGCTTCCTCGAGATCTCAGTAACTTGGAGAGATTTGTGAGACCTGAGTTTCTTCGACCTGATAATTACTTCTTCCACCTCATCATCGCCTTCCTCAAGTGCTTCTGGTAG 2202 0.4251 MPSCGEPSTATTAHAAPAACRCASRHPVEGSEDGAKEDAIWGLGKDLCNWNKVPGNPKNNDLNEATDWDFEDDDEFWELGTQPATTRVNMCTGNYSFVLLGFVSSFGYGETPPQLNLGDHCNPFSSSGCSTIGTETKYCQQQGIKVMLSLGGVSTNYYLSSSDDALNLSDYLWNNFLGGSSSSSRPLGGAILDGIDFNIQTSIKHLEDLARYLKSHNTDSQKLYLSAAPECPFLDAFLGTALNTGLFDYVWVQFFENPPCAYSEANPNAFVNAWNQSATSLNGSKIFLRLTTSELAIGYIPADLLISKVLPTVKKSPNYEGVTLESRKHDSGFEERFGYMSTDSIKVYEGGDLGGQCCETICWNNCSCEAYDPVSGCHIWLKGTRFTDYAAGSKGLSIYIVRHKVGASLALLLICYLCYASVRKYKAEVERRTKQKKILHEIGGNAMISMGMEKPEGTRNMGRKEMRSKYSVLIALWLPQTISQILTSFERVVLVLYISGYMAPEYAINGAVSIKTDIFNFGVLLIEILSGKKNNNRFDLYRPLNQIGYNKVQRAIHIGLFCVQDQAKERPSMLDVISFLSNNSIQLAQAKQPAYFIGDVEEEGSELHNMRQQYYSINCATVSNLEDAIKRNALKALLTSLFAQIFKTKKFKVDDDVTLHVQMLIITPIVVRPLMRLVRALMTEPVGSLTTMLYSGNRLPRDLSNLERFVRPEFLRPDNYFFHLIIAFLKCFW 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0850 733 Gene3D Glycosidases 75 335 - -
Lele42g0850 733 PANTHER ENDOCHITINASE 88 332 - -
Lele42g0850 733 Pfam Glycosyl hydrolases family 18 89 273 IPR001223 GO:0005975
Lele42g0850 733 SUPERFAMILY (Trans)glycosidases 77 324 IPR017853 -
Lele42g0850 733 Gene3D Transferase(Phosphotransferase) domain 1 462 592 - -
Lele42g0850 733 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 59 340 IPR001223 GO:0005975
Lele42g0850 733 SUPERFAMILY Protein kinase-like (PK-like) 496 586 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0850 Lele-ChrLele42 21363947 21374389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0850 76 342 Glycoside Hydrolase AT5G24090 48.148 6.78e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele42g0850 Glyco_hydro_18 1.7e-14 CL0058