Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0840 ATGTCTTCTGTTCAAGATAATTGGATTTCTTCGGAGGTGGATACAGAGGTTAGGGAAGTGTTGGTGATCTGGAATTGGTACAAGAGTTTAATTGTGGCTTTATTGCTTGGAGTTGTGGTTTGTTTAATGGATGACACCAAGGATGATGCAAGATATCCCCCTATTATGTATGGTGATAAAAACCATCAAGGTCGTGGCCATCTGAATCATCAAAAACATTCGGTTAAGAGTTCTCCATATTCTCAGCCCGTTACAAATGAGTATTTGGAAGATAATAATGATGATGAGGAGGATGGAGAAGATGTGGAACTTTTAGTGGATGAGGAAGATGATGATGCTGATCAGAGTAATAGTATTTATCTGCAAAATGATGTTGGTGCGAATGATTATGAGAAAGATGATGAGGGTGAAGGTGATGATGATGAAAATCATGGTAACAAAGACAACAATGATGGTGATGATGATACTGATGATGAAGATGATGGTTGTAAGAAGAGGAGTTATAAGAAGAGAGTTGAAGATGATTCAGAATGGCATCCGAAAAAGCGAAAGCTGAAAAGCTTGATTTCAGCTTATGAAGTTGCCCCTCGTGTGCCAGCAGCAGCACCATCATCTGCAACTCACTCAGAACCAAAACCATATTTTGGTTCCAGGAATTCCCTTACTGACTGGACTGAACATGAGACATTTTTTCTTCTTGATGCTTGGGGAAACCGGTTTCTTCAACAAGGAAGGAAAAGTCTTCGGTCTGAGCAATGGCAAGAAGTTGCAGAAGAAGTATCAGAAGTTTCTAAAATTGAAAGGACGGATGCTCAGTGTCGGAATCGTCTAGACACATTAAAGAAGAAATACAAAAAGGAGAAAACTAAATTAGCAGAAATCGGGGGCGGATCAAGCAAATGGGTGTGTTTCAAAAGGATAGATAAGCTATGGTCTTCCCCTCCACAGCAAGCTGGTCTCTCTTGTGGTTTAGACTCAGGAGAGTATGTTTTTATGAACCCTAGAGTTTATTTGAACCGTGCAAATGGGTTAGATGAGATGAGGGATAGTCCAGGGAATTCAGAATCCACTGGTGAAGATGAAGATTTATTAGGTGGACTTCATCCAAAGAAAAGAAGGCATGGAAGAGGGGACAGTGATGAAACTTCCTACAGATCGCTGGCCGAATTGATTCAGAAATTCGGCGAGATATATGAGAAGATTGAAAATAGTAGAAGGCAGCAGATGGTGGAACTGGAACAGATGAGAATGGATTTCCATAGAGAATTGGAAACACAGAAGAGGCAGATGTTAGAGAGATTGCAAGGTGAGATTGCAAAACTGGATCAGAGAGATAATGAGGATAATGATGATTCTGTAGAGAAGGATGAGTAA 1374 0.4032 MSSVQDNWISSEVDTEVREVLVIWNWYKSLIVALLLGVVVCLMDDTKDDARYPPIMYGDKNHQGRGHLNHQKHSVKSSPYSQPVTNEYLEDNNDDEEDGEDVELLVDEEDDDADQSNSIYLQNDVGANDYEKDDEGEGDDDENHGNKDNNDGDDDTDDEDDGCKKRSYKKRVEDDSEWHPKKRKLKSLISAYEVAPRVPAAAPSSATHSEPKPYFGSRNSLTDWTEHETFFLLDAWGNRFLQQGRKSLRSEQWQEVAEEVSEVSKIERTDAQCRNRLDTLKKKYKKEKTKLAEIGGGSSKWVCFKRIDKLWSSPPQQAGLSCGLDSGEYVFMNPRVYLNRANGLDEMRDSPGNSESTGEDEDLLGGLHPKKRRHGRGDSDETSYRSLAELIQKFGEIYEKIENSRRQQMVELEQMRMDFHRELETQKRQMLERLQGEIAKLDQRDNEDNDDSVEKDE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0840 457 Gene3D - 224 286 - -
Lele42g0840 457 ProSiteProfiles Myb-like domain profile. 224 281 IPR001005 -
Lele42g0840 457 Coils Coil 398 451 - -
Lele42g0840 457 MobiDBLite consensus disorder prediction 344 384 - -
Lele42g0840 457 Pfam Myb/SANT-like DNA-binding domain 223 310 IPR044822 -
Lele42g0840 457 MobiDBLite consensus disorder prediction 434 448 - -
Lele42g0840 457 MobiDBLite consensus disorder prediction 89 115 - -
Lele42g0840 457 FunFam trihelix transcription factor ASIL2 224 286 - -
Lele42g0840 457 MobiDBLite consensus disorder prediction 434 457 - -
Lele42g0840 457 MobiDBLite consensus disorder prediction 159 182 - -
Lele42g0840 457 MobiDBLite consensus disorder prediction 361 383 - -
Lele42g0840 457 MobiDBLite consensus disorder prediction 50 182 - -
Lele42g0840 457 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 213 448 IPR044823 -
Lele42g0840 457 MobiDBLite consensus disorder prediction 73 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0840 Lele-ChrLele42 21292608 21294182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0840 377 444 Trihelix Transcription Factor Family AT3G14180 44.118 6.22e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele42g0840 Myb_DNA-bind_4 1.3e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0840 42 21292608 21294182 Lele43g0542 43 4897410 4898648 hybridization
Lele42g0840 42 21292608 21294182 Lele44g0506 44 3886607 3891634 hybridization