Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0826 ATGACGTGGACAGAAATCCTCACACAAGTACGAATTCGCAGCCCCTTTTCTGGGTTTCTTCAACTTCACTCTCCGTCGCAATCTCTGCCGGCCGACATCAATGAGCTCAGCGATGAGCTATTGGAAGAGATATCAACACAACACTATGCAAAGAAGGAAGTGGTCAGACAAAACTCTAGACAATTGCACAAGGAACCAAAATTGGAAGCGAAAGCAAAACAAGAACAGTGTAGTGTTTGTCTTCAATCTTTTCAAGAAAATGGTGATTTTGTGGCAATGCCATGTCATCATATTTATCATAATAAATGTATTGTTGAGTGGTTTCATGTATCCCCTCATTAG 342 0.4094 MTWTEILTQVRIRSPFSGFLQLHSPSQSLPADINELSDELLEEISTQHYAKKEVVRQNSRQLHKEPKLEAKAKQEQCSVCLQSFQENGDFVAMPCHHIYHNKCIVEWFHVSPH 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0826 113 Pfam RING-like zinc finger 76 104 IPR001841 -
Lele42g0826 113 ProSiteProfiles Zinc finger RING-type profile. 77 107 IPR001841 -
Lele42g0826 113 SUPERFAMILY RING/U-box 76 112 - -
Lele42g0826 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 113 IPR013083 -
Lele42g0826 113 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 109 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0826 Lele-ChrLele42 21180240 21180761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0826 38 112 C3H Transcription Factor Family AT1G21960 30.769 6.07e-08 47.0