Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0822 ATGGATGTTAACTCTCCAGAACCGAATATAAACTCCCAAACCGACAGATATCCTTTGCTGATGGAGCAGTCTGAAAGCCACCATCAGCACGTAATTGACATCACAAGGAATGGTGATGCTTTATCCAACTCATTGCATGTTGCTCAACTTCCTGAAATACATTTAACACAGAATGAAGATCAACAGTCCAGTGGTACACGAGACCCTACTCATCAAACATCTTCCTCTTCTAGATTAAACTCTCAAAATTCTTCATCAACTAGAGGTGAGGGGTATCGTCATCGAAGAAGGAATCCATTAAATTCTGTACTATGGATTTCAGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTATAGTTGTCTTGTCATTGTCAAGGAATGAAAATCCACAAGCCCCATTATTTGCATGGGTTGTGTGTTATACATCTGGTTGTGTTGCCACACTTCCTATTCTATATTGGCGGTATCATAGCCATAATCAAAGTACTGAACAAGATACATCTCAACAACCTCAAGGACCTTCTGGAAGCACTCATCCATTACCTACCTCATACACTGCTATCTCCAATGCTCATGTTTCAGATGAGGAGAATAGTCATGTGACAGCATCAGCTGCTAGAAACAGTAGGATTCCTGGAGCCATTTTTTCTAGGCTTAATGGATTGGTAGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTATGGATCTTTGGAGGCCACACTTCTCCTTCGGATGCTCCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTCAGCTGCATTGGATATGCTATGCCATTTATCCTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTCCTCGGCATTCGGGAGGATTTTTCTCAAACTAGAGGCGCAACAGTAGAGTCTATCAATGCCCTGCCAATTTACAAGTTCAAATTGAAGAAAACTGAAAATAGGGACAATCAGGATGTCAACACAGCTATAGATGAAGGTGGCATCTTCGCTACGGGGACAGAAAAGGAGCGGGCCATATCTGGAGAAGATGCTGTCTGTTGCATTTGCTTGGCGAAATATGCAGACAATGATGACCTTAAGGAGTTACCATGTCTTCATTTCTTTCACGTAGAGTGTGTTGACAAATGGTTGAAGATAAACGCATCATGTCCTCTCTGTAAAAGTGATGTTGGCGGGATTAGTGGAGAGTCTCCTTCCGCTGGGGACTCCAGTTCGGTTTAG 1266 0.4202 MDVNSPEPNINSQTDRYPLLMEQSESHHQHVIDITRNGDALSNSLHVAQLPEIHLTQNEDQQSSGTRDPTHQTSSSSRLNSQNSSSTRGEGYRHRRRNPLNSVLWISVELVVTVGQIIASIVVLSLSRNENPQAPLFAWVVCYTSGCVATLPILYWRYHSHNQSTEQDTSQQPQGPSGSTHPLPTSYTAISNAHVSDEENSHVTASAARNSRIPGAIFSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFKLKKTENRDNQDVNTAIDEGGIFATGTEKERAISGEDAVCCICLAKYADNDDLKELPCLHFFHVECVDKWLKINASCPLCKSDVGGISGESPSAGDSSSV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0822 421 SMART ring_2 361 401 IPR001841 -
Lele42g0822 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 409 IPR013083 -
Lele42g0822 421 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 405 - -
Lele42g0822 421 SUPERFAMILY RING/U-box 354 406 - -
Lele42g0822 421 SMART ringv_2 360 402 IPR011016 GO:0008270
Lele42g0822 421 CDD RING-H2_RNF111_like 360 404 - -
Lele42g0822 421 FunFam E3 ubiquitin-protein ligase 344 410 - -
Lele42g0822 421 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Lele42g0822 421 MobiDBLite consensus disorder prediction 57 94 - -
Lele42g0822 421 MobiDBLite consensus disorder prediction 57 88 - -
Lele42g0822 421 Pfam Ring finger domain 361 402 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0822 Lele-ChrLele42 21145757 21148710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0822 1 412 C3H Transcription Factor Family AT1G80400 56.145 1.53e-164 466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0822 42 21145757 21148710 Lele43g0560 43 5036464 5039553 hybridization
Lele42g0822 42 21145757 21148710 Lele44g0521 44 4035482 4038424 hybridization