Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0821 ATGGAAAAAGATGGGGGTTTGGGACTTGAGATAACGGAGCTGAGGTTGGGACTTCCTGGTGGGAGGGAGAAGAAGAATGAGAAGAAGAGGCTGTTCTCGGAGATTGATGATGATCATCATGAGGAGGATGGCGGTGGCGGAGAGGATCAGAACAGCTCGTCGGAGGGAGAGCGGAAAGTGGTGGTGGGGTGGCCGCCGGTGTGCTCGTACAGGAGGAAGAATAGCGTGATGAGCAATGAAGGGTCAAAAATGTACGTGAAAGTGAGCATGGATGGAGCTCCATTCTTGCGCAAAATCGACTTGCAAAAGCTTAAGGCTTACTCTGAACTCGCTCTCGCCTTGGAAAATCTCTTTGGTTGCTATGGAATCAAGGAGGCGTTGAAGAATGGAGACAAAAGCGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTCGTTGGCGATGTCCCTTGGGAGATGTTTATGGAGTCATGCAAGAGGTTGAGGATAATGAAGAAATCAGAGGCAAAGGGATTTGGTGTGACACCAAAAGGGTCTCTGAAGGGATTTAATATTATAGAAGGCGTCACCAACTGA 585 0.4872 MEKDGGLGLEITELRLGLPGGREKKNEKKRLFSEIDDDHHEEDGGGGEDQNSSSEGERKVVVGWPPVCSYRRKNSVMSNEGSKMYVKVSMDGAPFLRKIDLQKLKAYSELALALENLFGCYGIKEALKNGDKSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSEAKGFGVTPKGSLKGFNIIEGVTN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0821 194 ProSiteProfiles PB1 domain profile. 83 169 IPR000270 GO:0005515
Lele42g0821 194 MobiDBLite consensus disorder prediction 16 58 - -
Lele42g0821 194 MobiDBLite consensus disorder prediction 17 55 - -
Lele42g0821 194 Pfam AUX/IAA family 47 175 IPR033389 -
Lele42g0821 194 Gene3D - 77 180 - -
Lele42g0821 194 SUPERFAMILY CAD & PB1 domains 74 168 - -
Lele42g0821 194 FunFam Auxin-responsive protein 78 179 - -
Lele42g0821 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 173 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0821 Lele-ChrLele42 21129481 21133391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0821 53 184 B3 DNA Binding Superfamily AT4G23980 35.606 1.37e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele42g0821 AUX_IAA 4.2e-45 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0420 37 3476957 3478483 Lele42g0821 42 21129481 21133391 CCT
Lele42g0821 42 21129481 21133391 Lele43g0562 43 5054285 5058128 hybridization
Lele42g0821 42 21129481 21133391 Lele44g0522 44 4052958 4057328 hybridization