Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0820 ATGTCTTCGAAGAATCATCAACCGGACGATACCGCCATTGAGCTCAACTTCAACGACACCGAGCTCACCCTGGGCCTTCCCGGCGCTAAAACCGGTTCAAAACGTGGATTTTTCCACACAGCCACCAACAATAATGGCCATGCCTCAGCTACATCTGCTAAATCTCCCCCAGAAAAGGCACAGATGGTGGGGTGGCCGCCGGTGAGGGAGAGCAGAAAGAGCGTGATGAAGAAATGCAAGTACGTGAAGGTAGCCGTGGACGGAGCTCCATATCTCAGAAAAGTAGATCTTGATATGTATCAGTGTTATGAGGAACTCCTAAGCTCCTTAGAAACCATGTTCAGCTGCTTAACTATCCGCAATGATTTGAATCAGAAAGAGAATGGTGGAAAGAAGAATAATGGAAGCGAATACATACCAACCTATGAGGACAAAGATGGTGACTGGATGATGGTCGGAGATGTCCCCTGGAACATGTTTGTGGAATCCTGCAAGAGAATAAGGTTGATGATGAGCTCAGAGGCCACTGCTGGGTTAGGTGCGAGAAGAGGTTCAAAGTGA 561 0.4795 MSSKNHQPDDTAIELNFNDTELTLGLPGAKTGSKRGFFHTATNNNGHASATSAKSPPEKAQMVGWPPVRESRKSVMKKCKYVKVAVDGAPYLRKVDLDMYQCYEELLSSLETMFSCLTIRNDLNQKENGGKKNNGSEYIPTYEDKDGDWMMVGDVPWNMFVESCKRIRLMMSSEATAGLGARRGSK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0820 186 Pfam AUX/IAA family 77 176 IPR033389 -
Lele42g0820 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 176 IPR003311 GO:0005634|GO:0006355
Lele42g0820 186 FunFam Auxin-responsive protein 74 183 - -
Lele42g0820 186 Gene3D - 73 182 - -
Lele42g0820 186 ProSiteProfiles PB1 domain profile. 79 176 IPR000270 GO:0005515
Lele42g0820 186 MobiDBLite consensus disorder prediction 42 67 - -
Lele42g0820 186 MobiDBLite consensus disorder prediction 42 56 - -
Lele42g0820 186 SUPERFAMILY CAD & PB1 domains 70 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0820 Lele-ChrLele42 21119702 21120558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0820 82 175 B3 DNA Binding Superfamily AT2G46530 32.979 1.66e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele42g0820 AUX_IAA 1.5e-44 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0820 42 21119702 21120558 Lele44g0523 44 4065108 4065976 hybridization