Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0807 ATGCCACAGCCACCAGAGACAAATGGTGAAGATAAGATAAATTTTAAGTGGGGCAACAAGAGGGGAGTTGGTCAGAATAATAAAAACGTCCGGTTATACGAGTCATTCACTTATGATGGCGTGGAGTACTTTCTATATGATTGTGTTTACTTTTACAGAACAGGTGATTTTGAAACATCTATTGGTAAGCTTGTGCAGATATTTGAGACTCCAAACCATGAAAAGAAGGTGAGAGTTATCTGGTTTTTCCGTCCTATTGACATTCGCGGCTCCTTAGGAGATTATCGGCCAAATTGGAAAGAGTTATTTCTAGCATGTGGTGAAGGCAAAGGTGTTTCAAATGTCAATTCTTTGGAAAGTATAATTGGAAAATGCAATGTTGTCTGCACTGCAAAGGATGAAAGAAATCTTGAGCCATCACAAGCAGAGCTAAAGATGGCAGACTACTTTTTCAAGCATTGCTTTAATGTTGGACGCCTTTCAATAATGAATAAATTTGCAGATGTTATTGGTCGAGTCAAAGTGGAGGAAATCTTCAACAGGAAGAAGGTTCAAAAGATCAGTAATCCGATATCAAAGCATGGATTTGTGATTAAGAAGAGGACTGATCCTTCTGGTATGCCACGCCACCAATTTGATGGTAAAGCTGAAGTGAAATCTGATATTGCCATGCAAAAGAACAAATTATTAAATTCTTTTCCATACAAGAAGAGGAAGATGCTAGACCAGACGCAGTCCAGTAGTCAAAGCAAAGAATCCACTATGAAAGAGGATTTTGACAAGAGAAGTAAGCTGTTTCATGAAGGTGCTCCTGAGCTTGGATTGAGCAAAGTAGTAAAACAATACGGAGAATTTATGGAGGTCATTGGAAGGCCAGGCAATGTATGTCTTGAAAAATTCATTATGCCTTGGGAAGAAAAACTAAGGGAAGCTCAAGAGTCAGGCTGCCTGATTTTACTGAATAATCTTGATCCATCCTGCACATCATCTGAAGTAGAGGATCTCATTTGGCATACCCTCAATGAGAGTGTTTACGCAAAGATGATAGATTGGAACCCTACTCTCAATCCACATTATGGTAGAGCATTTGTTGTCTTCAAGACAAAAGATGTTGCTGAATCTGCCTTATCTCAGTTGAATAAGAGATGCCTTGTTCTTGGAGATGGAAGGGTTGTCAGTGCCACAAAAGGAAGGGTGAGAGAAACCGGTGAACAAACTAACTTCCCAGGCCATGTGGTCATGAACAGATTTGAGTTTCATAAGCAAACTGAGGAGATGAGAAATGCAGTATCAACATCACATTGTGCCCAACCCAATACGGTTGAGTATAGAATGGCCATTGATTGGCGTAAACTACAGCATATATCGAATGCATGGTGGGATGTATTACATAAGTCACAGAAGGAGGAGATGCATGATGTTATGAGCAGACTCAGAATGAAGTTTCGTGTTTCCTTTCTTGTTTTTCAAGAATCAAAATACGGTAAAGTTGGGTCAAGTTTTCTTATGCTTGCATACTCTGTCTGGCTCGAGCATTGTTGAATGGAGCACTTGAAGGCACCTTTCAAAGGTGTAGCTGATGATGTTCGAGGAAGAGCAAAGTGTTACAAAGAAGATTGGATTTCTGGTCTCAGTTCAGGAACTGGGATATTGGCTCCAGCCACTTACATCTTCTTCGCTTCTGCACTTCCTGTCATTGCCTTTGGAGAACAACTCAGTAGAGACACAGATGGAAGCTTGAGCTCAGTAGAAACACTGGCTTCAACTGCTATATGTGGAATCATACACTCAATTCTTGGAGGCCAACCTTTGCTTATAGTAGGAGTTGCAGAACCCACTATCATCATGTACACTTACTTGTACAATTTTGCTAAAAACAGGGATGATTTAGGGCGACAACTCTTCTTGGCTTGGGCTGGATGGGTTTGTGTTTGGACAGCTTTATTTTTGTTTCTTCTAGCTATATTCAATGCTGGCGTCATTATCAATAGATTCACGAGAATTGCTGGTGAGCTTTTTGGCATGTTGATCACTGTATTGTTCATTCAAGAGGCTATTAAGGGAGTGGTAAGTGAGTTTAAGGTTCCAAAAGCGGAAGACCCAACATCAGAGAAGTACAAATTTCAATGGCTATATGCAAATGGATTACTGGGAATCATATTCACCATTGGCCTTCTCTTCTCTTCTTTGAAGACCAGAAAAGCCAGATCATGGTTATATGGAAAAGGCAAGTTGAGAAGTTTCATTGCAGACTATGGAGTTCCTTTAATGGTGGTGGTGTGGACAGCTTTGTCTTTCACAGTACCAAGTGAACTTCCCTCTGGAGTCCCTAGAAGGCTCTTTACCCCTCTTGCTTGGGAATCTTCTTCTTTACACCATTGGACAGTCCTCAAAGACATGGGGAAGGTTCCACCTGCATATATTTTTGGTGCTATTATACCCGCGTTGATGATTGCGGGTCTTTACTTCTTCGATCATAGTGTTGCTTCTCAAATGGCACAACAGAAGGAATTCAATCTGAAGAAGCCTTCTGCTTATCATTACGATGTTTTGCTGCTAGGAGTCATGACTTTGCTTTGTGGGTTGCTTGGTTTGCCGCCTTCCAATGGAGTTCTTCCTCAATCCCCCATGCACACCAAAAGCCTCGCTGTTCTCAAGAAACAGTTGATTCGTAAGAAGATGATGGAAAGTGTGAAGGAAAGCATAAGTCGCAACGCAAGCAACTCTGAGATCTATGGAAGCATGCAAGCAGTGTTTGTAGAAATAGACAAAAGCCCAATTTCTTCAGTGGCAAAAGAATTGAAGGACCTGAAAGAAGCAGTCCTAAAAGAGGAAGAGAAAAGGGAAACATTTGATCCTGAGAAACACATTGATGAACATCTGCCCATTAGAGTGAAAGAGCAAAGAGTGAGCAATCTGTTACAAGCAGTACTTGTTGGAGCATCTGTGTTTGCTATGCCTCTCTTAAAGAAGATACCCACTTCAGTTCTGTGGGGTTACTTTGCTTACATGGCCATTGATAGTCTTCCTGGAAACCAATTCTGGGAAAGGATACTATTCATTATCGTAGCCCCTAATAGGCGATACAAGGTGTTGGAAGGGAACCATGCCTCTTTCGTGGAGACAGTACCAACGAGAGGGATATTGTTCTTCACACTGTTTCAATTTGTGTATTTCTTGGTTTGTTTTGGAGTGACATGGATTCCAATAGCAGGAATATTGTTTCCTTTGCCCTTCTTTGTGCTCATCGTAATAAGGCAGTATCTTCTTCCCAAGCTGTTCAATCCTCACCATTTAAGGGAACTTGATGCCGCTGAATATGAAGAGATTACTTGCACTCCAAGGCGGCTTTCCTTCAATCTCTCTTCCAAGGAAGTGGAATCGAACGGCGTGGGATCATGGGGAATGGAAGATGGAGAGATATTAGATGAGACTACCACTGGCAGGGGAGAGTTGAAGGTCAGAAATGCTAGCTTTAGCGAGGAAAGACATGTACAGGGATTGCAAGTGTATCCCCATGAAGTAGAGAGGGGAATGGATTCCAATATTTGA 3552 0.415 MPQPPETNGEDKINFKWGNKRGVGQNNKNVRLYESFTYDGVEYFLYDCVYFYRTGDFETSIGKLVQIFETPNHEKKVRVIWFFRPIDIRGSLGDYRPNWKELFLACGEGKGVSNVNSLESIIGKCNVVCTAKDERNLEPSQAELKMADYFFKHCFNVGRLSIMNKFADVIGRVKVEEIFNRKKVQKISNPISKHGFVIKKRTDPSGMPRHQFDGKAEVKSDIAMQKNKLLNSFPYKKRKMLDQTQSSSQSKESTMKEDFDKRSKLFHEGAPELGLSKVVKQYGEFMEVIGRPGNVCLEKFIMPWEEKLREAQESGCLILLNNLDPSCTSSEVEDLIWHTLNESVYAKMIDWNPTLNPHYGRAFVVFKTKDVAESALSQLNKRCLVLGDGRVVSATKGRVRETGEQTNFPGHVVMNRFEFHKQTEEMRNAVSTSHCAQPNTVEYRMAIDWRKLQHISNAWWDVLHKSQKEEMHDVMSRLRMKFRVSFLVFQESKYGKVGSSFLMLAYSVWLEHCXMEHLKAPFKGVADDVRGRAKCYKEDWISGLSSGTGILAPATYIFFASALPVIAFGEQLSRDTDGSLSSVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKNRDDLGRQLFLAWAGWVCVWTALFLFLLAIFNAGVIINRFTRIAGELFGMLITVLFIQEAIKGVVSEFKVPKAEDPTSEKYKFQWLYANGLLGIIFTIGLLFSSLKTRKARSWLYGKGKLRSFIADYGVPLMVVVWTALSFTVPSELPSGVPRRLFTPLAWESSSLHHWTVLKDMGKVPPAYIFGAIIPALMIAGLYFFDHSVASQMAQQKEFNLKKPSAYHYDVLLLGVMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKKQLIRKKMMESVKESISRNASNSEIYGSMQAVFVEIDKSPISSVAKELKDLKEAVLKEEEKRETFDPEKHIDEHLPIRVKEQRVSNLLQAVLVGASVFAMPLLKKIPTSVLWGYFAYMAIDSLPGNQFWERILFIIVAPNRRYKVLEGNHASFVETVPTRGILFFTLFQFVYFLVCFGVTWIPIAGILFPLPFFVLIVIRQYLLPKLFNPHHLRELDAAEYEEITCTPRRLSFNLSSKEVESNGVGSWGMEDGEILDETTTGRGELKVRNASFSEERHVQGLQVYPHEVERGMDSNI 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0807 1183 Coils Coil 927 947 - -
Lele42g0807 1183 Gene3D - 10 165 IPR043151 -
Lele42g0807 1183 Gene3D Helical hairpin bin 532 574 - -
Lele42g0807 1183 CDD RRM_SF 318 394 - -
Lele42g0807 1183 PANTHER ANION EXCHANGE PROTEIN 462 1111 IPR003020 GO:0005452|GO:0006820|GO:0016020
Lele42g0807 1183 Pfam HCO3- transporter family 713 889 IPR011531 GO:0006820|GO:0016020
Lele42g0807 1183 Pfam HCO3- transporter family 521 696 IPR011531 GO:0006820|GO:0016020
Lele42g0807 1183 Pfam HCO3- transporter family 963 1053 IPR011531 GO:0006820|GO:0016020
Lele42g0807 1183 Pfam BAH domain 47 135 IPR001025 GO:0003682
Lele42g0807 1183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 399 IPR000504 GO:0003723
Lele42g0807 1183 FunFam Bromo-adjacent homology (BAH) domain-containing protein 11 162 - -
Lele42g0807 1183 SUPERFAMILY RNA-binding domain, RBD 310 402 IPR035979 GO:0003676
Lele42g0807 1183 Gene3D - 303 398 IPR012677 -
Lele42g0807 1183 ProSiteProfiles BAH domain profile. 41 166 IPR001025 GO:0003682
Lele42g0807 1183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 383 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0807 Lele-ChrLele42 20968286 20981595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0807 510 1183 Antiporters AT1G74810 66.328 0.0 951
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0807 42 20968286 20981595 Lele37g0473 37 3908776 3911617 CCT
Lele42g0807 42 20968286 20981595 Lele38g0441 38 3591895 3595440 CCT
Lele42g0807 42 20968286 20981595 Lele39g0953 39 18377264 18380997 CCT
Lele42g0807 42 20968286 20981595 Lele40g0415 40 3418491 3421283 CCT
Lele42g0807 42 20968286 20981595 Lele44g0538 44 4201146 4207098 hybridization