LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g0806	ATGGAGAACCTGAAAACACCCTTCAAGGGTGTAGTTAGTGATATTCGAGGAAGAGCCAAGTATTACAAGGAAGATTGGATTTCTGGTATCTGTTCAGGAATCGGGATATTGGCTCCAACTACCTATATGTTCTTTGCTTCTGCTCTTCCTGTTATAGCCTTTGGAGAACAGATCGATAGAGACACAGATGGAAGCTTGAGCTCAGTAGAAACACTAGCTTCAACTGCTATGTGTGGAATCATACATTCAATTATCGGGGGCCAGCCATTGTTAATACTCGGAGTTGCAGAACCCACTATCATCATGTACATTTACTTGTACAATTTTTCTAAAGATAGGGATGATTTGGGACGACAACTCTTCTTGGCTTGGGCTGGATGGGTTTGCGTTTGGACAGCACTGATGTTGATTCTTCTAGCAATATTCAATTCGGGAGCCATTATTAATAGATTAACCAGAATTGCCGGCGAACTTTTTGGCATGTTGATCACAGTCTTGTTCATTCAAGAGGCGATCAAGGGAATGGTGAGCGAGTTTAAGATTCCCAAACATGAAGACCGAAGTTTAGAGAAGTACAAATTTAATTGGCTTTATGTAAACGGAATATTGGGAATTATATTCACCTTTGGCCTTCTCTTTTCTTCTCTCAAGACCAGAAAAGCTAGATCATGGTTATACGGCACAGGCAAATTAAGAAGTTTCTTGGCAGACTATGGGGTTCCTTTAATGGTGGTATTGTGGACAGCTTTGTCTTTCACAGTACCAAGTCAACTTCCCTCTGGAGTTCCTAGAAGGCTCTTTGCTCCTCTTGCTCGGCAATCTGCATCATTACACCATTGGACTGTCATCAAAGACATGGGAAAGGTTCCACCTGCATATATTTTTGGTGCTATTATTCCTGCATTCATGATCGCGGGTCTTTACTTCTTCGATCATAGCGTTGCTTCTCAAATGGCACAACAGAAGGAATTCAATCTCAAGAAAACTTCTGCTTATCATTATGACGTTCTGCTTCTAGGGTTCATGACTTTGCTTTGTGGGTTGCTTGGTTTACCACCTTCTAATGGAGTTCTTCCTCAATCCCCCATGCACACCAAAAGCCTTGCTGTTCTCAAGAAACAGTTAATTCGAAGGAAGATGATGAAAAGTGTGAAAGAAAGCATAAGGAACAAAGCAAGCGGCTCTGAGATCTATGGAAACATTCAACAAGTGTTCGTAGAAATAGACAAAAGCCCAATTAACACAGTGGTGAAAGAATTAGAGGACCTGAAAGAAGCTGTGCTGAAAGAGGAGGAGAAAGAATCATTCGACCCAGAGAAACACATAGACAAACATCTGCCCATAAGAGTGAAAGAGCAAAGAGTGAGCAATCTGTTGCAAGCAATTCTTGTTGGAGCATCAGTGTTTGCTATGCCTGTGATAAAGAAGATACCCACTTCAGTTCTGTGGGGTTACTTCGCTTACATGGCCATTGATAGTCTTCCTGGAAATCAGTTCTGGGAAAGAATCATATTCATCTTCATATCTCCCAATAGACGATACAAGGTGTATGAAGGGGACCATGCTTCGTTTGTAGAGACGGTACCAGTGAGAGCGATTGTGTTCTTCACACTGTTCCAATTTGTGTATTTGTTGGTTGCTTTTGGAATGACATGGATTCCAATAGCAGGAATATTATTTCCTTTGCCTTTCTTTGTGTTGATCATAATAAGGCAGTATCTGCTTCCCAAGCTCTTCAATCCTCGGCATTTAAAGGAACTTGATGCTGCTGAATATGAAGAAATCGCTGCTACTCCAAGACTCTCCTTCCGTCTCTCTTCTTCCCAGGGTGCGGATTCAACAAGTATGGGATCGAGGGAAATGGGTGATGGTGAGATATTAGACGAGGCCACAACTGGTAGAGGAGAGTTGAAGCTCAAAACATTTAGCTTTAGATCAGAGGCACGTACACAGGCGTTGCAAGGAGATGAAATCGAGAGCGAATCAGATTCCTAA	1995	0.4201	MENLKTPFKGVVSDIRGRAKYYKEDWISGICSGIGILAPTTYMFFASALPVIAFGEQIDRDTDGSLSSVETLASTAMCGIIHSIIGGQPLLILGVAEPTIIMYIYLYNFSKDRDDLGRQLFLAWAGWVCVWTALMLILLAIFNSGAIINRLTRIAGELFGMLITVLFIQEAIKGMVSEFKIPKHEDRSLEKYKFNWLYVNGILGIIFTFGLLFSSLKTRKARSWLYGTGKLRSFLADYGVPLMVVLWTALSFTVPSQLPSGVPRRLFAPLARQSASLHHWTVIKDMGKVPPAYIFGAIIPAFMIAGLYFFDHSVASQMAQQKEFNLKKTSAYHYDVLLLGFMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKKQLIRRKMMKSVKESIRNKASGSEIYGNIQQVFVEIDKSPINTVVKELEDLKEAVLKEEEKESFDPEKHIDKHLPIRVKEQRVSNLLQAILVGASVFAMPVIKKIPTSVLWGYFAYMAIDSLPGNQFWERIIFIFISPNRRYKVYEGDHASFVETVPVRAIVFFTLFQFVYLLVAFGMTWIPIAGILFPLPFFVLIIIRQYLLPKLFNPRHLKELDAAEYEEIAATPRLSFRLSSSQGADSTSMGSREMGDGEILDEATTGRGELKLKTFSFRSEARTQALQGDEIESESDS	664

Showing 1 to 1 of 1 entries

Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g0806	664	MobiDBLite	consensus disorder prediction	606	632	-	-
	Lele42g0806	664	Pfam	HCO3- transporter family	202	375	IPR011531	GO:0006820\|GO:0016020
	Lele42g0806	664	Pfam	HCO3- transporter family	448	538	IPR011531	GO:0006820\|GO:0016020
	Lele42g0806	664	Pfam	HCO3- transporter family	7	181	IPR011531	GO:0006820\|GO:0016020
	Lele42g0806	664	Gene3D	Helical hairpin bin	18	59	-	-
	Lele42g0806	664	PANTHER	ANION EXCHANGE PROTEIN	5	596	IPR003020	GO:0005452\|GO:0006820\|GO:0016020
	Lele42g0806	664	Coils	Coil	413	433	-	-

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g0806	Lele-ChrLele42	20947397	20954247	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g0806	1	659	Antiporters	AT1G74810	66.172	0.0	935

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele42g0806	42	20947397	20954247	Lele37g0477	37	3938964	3940785	CCT
	Lele42g0806	42	20947397	20954247	Lele38g0445	38	3622091	3622713	CCT
	Lele42g0806	42	20947397	20954247	Lele39g0948	39	18351199	18352992	CCT
	Lele42g0806	42	20947397	20954247	Lele43g0579	43	5209700	5218998	hybridization
	Lele42g0806	42	20947397	20954247	Lele44g0539	44	4209162	4213764	hybridization

Showing 1 to 5 of 5 entries