Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0786 ATGGGTGTCTCATTGGAAAGATCTGATCTGATTCTCACTATCATTTTTCTCTTCCCTCTAATCTTCGGATCTGTCTGCACTGGTGAGATGGCGCAAATTTTGCTCCATGGTACTCTCCATGTCACGATCTTTGAGGTGGATAGGCTGAAGAGCGGTGGTGGCAATATCTTCGGCAAGCTCAAGGAAAATTTTGAGGAGGCAGTTGGTTTTGGAAAGGGAGTTACTAAACTCTATGCAACCATCGATCTTGAGAAGGCCAGAGTTGGAAGGACTAGAATTCTAGAAAATGAACATTCCAACCCTAAGTGGTATGAGTCTTTTCACATTTATTGTGCTCACATGGCTTCTGATATTATATTTACTGTGAAAGATGATAATCCTATTGGGGCAACCTTGATTGGAAGAGCACATGTGCCAGTTACTGATGTCTTGAATGGTGAAGAAATAGATAGGTGGGTTGAAATCTTGGATGAGGACAAGAATCCCATTCATGGTGATTCAAAAATCCATGTGAAACTGCAATACTTTGATGTCACCAAAGATCGCAGCTGGGCTCGTGGTGTTAGGAGTGGTAAATATCCTGGTGTTCCATACACTTTCTTCTCACAGAGACAAGGATGTAAGATCTCTCTGTACCAAGATGCTCATATCCCTGATAAATTTGTCCCTGAAATACCTCTTGCTGGAGGTGAGAAATATGATGGTCATAGATGTTGGGAGAATGTTTTTGATGCAATCACTAATGCCAAGCACTTAATATACATTACTGGTTGGTCTGTATATACCGAGATCTCCTTGGTAAGGGATAAAAGGAGGCCAAAGCCAGGGGGAGACATAACACTTGGTGATCTCCTCAAGAAAAAGGCAAGTGAAGGTGTCAGGGTTTTAATGCTTGTTTGGGATGATAGAACATCTGTTGGTTTGCTAAAAAAAGATGGATTGATGGCTACTCATGACGAAGAAACTGAGCATTACTTCCATGACACTGATGTGCATTGTGTTTTATGCCCCCGAAATCCTGATGACGGGGGAAGCATTATTCAGGACTTGCAAATTTCTACCATGTTCACCCATCATCAGAAGATTGTGGTGGTGGACAGTGAATTGCCAAGTGGAGGATCAGAGCAGCGAAGGATTGTTAGTTTCGTTGGGGGTATTGATCTCTGTGATGGTAGGTATGATACTCCCTTCCATTCACTGTTCAGAACTCTGGACACAGCACACCATGATGACTTTCATCAACCCAACTTTCCTGGTGCTGCGATCACGAAAGGTGGCCCCAGGGAGCCTTGGCATGACATCCATTCCCGGCTTGAAGGACCCATTGCTTGGGATGTTTTATATAACTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATGTACTTGTTCAGTTGAGAGAGCTTCAAGATGTCATCATTCCTCCATCCCCAGTTATGTTTCCTGATGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATCGATGGTGGAGCTGCTTTTGGGTTTCCAGAGACTCCTGAAGATGCTGCCAAAGCAGGGCTCATTAGTGGGAAGGATAATATTATTGATCGTAGTATTCAAGATGCTTATATTCATGCCATTCGACGAGCAAAGGATTTCATCTATATTGAAAATCAGTACTTCCTTGGAAGCTCTTTTGCTTGGAGTGCTGATGGTATCAAACCTGAGGACATAAATGCTTTGCATGTCATCCCAAAGGAGCTTTCACTTAAAATCGTTAGTAAGATCGAAGCTGGGGAAAGATTCACTGTGTATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTGCAGGCAATATTGGACTGGCAGAGGAGGACCATGGAGATGATGTACAGAGATGTTATTCAGGCACTTCGGGCCAATCGAATTGATGAAGATCCTCGTAACTATTTGACATTCTTCTGCCTCGGTAATCGGGAGTTGAAGAAACCTGGAGAGTACAAGCCTTCAGAAAGGCCTGATCCTGATTCTGATTATTTGAGAGCTCAAGAGGCTCGGCGCTTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGACGAGTACATACTCATAGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGACTCAGAGATTGCCATGGGTGCTTATCAACCCTATCATCTGGCCCACAGGCAGCCGGCGCGCGGTCAGATCCATGGTTTCCGCATGTCATTGTGGTATGAGCACCTCGGCATGCTTGACGATTCCTTCCTCCAACCTCAAAGCGAAGAATGTGTCAGGAAGGTGAACCAGATGGCTGACAAGTACTGGGACCTCTTTTCAAATGAGTCGCTGGAACACGATCTTCCAGGACACCTGCTTCGCTATCCCATCGATATTTCTGAAGAAGGAGAAATCACTGAGCTGACAGGATTCGAATTTTTCCCAGACACCAAGGCTCGTGTCCTCGGTGGAAAAGCCGACTACATGCCACCAATCCTTACAACTTAA 2511 0.4456 MGVSLERSDLILTIIFLFPLIFGSVCTGEMAQILLHGTLHVTIFEVDRLKSGGGNIFGKLKENFEEAVGFGKGVTKLYATIDLEKARVGRTRILENEHSNPKWYESFHIYCAHMASDIIFTVKDDNPIGATLIGRAHVPVTDVLNGEEIDRWVEILDEDKNPIHGDSKIHVKLQYFDVTKDRSWARGVRSGKYPGVPYTFFSQRQGCKISLYQDAHIPDKFVPEIPLAGGEKYDGHRCWENVFDAITNAKHLIYITGWSVYTEISLVRDKRRPKPGGDITLGDLLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHYFHDTDVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSELPSGGSEQRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWRKQGGKDVLVQLRELQDVIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAAKAGLISGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHVIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYRDVIQALRANRIDEDPRNYLTFFCLGNRELKKPGEYKPSERPDPDSDYLRAQEARRFMIYVHAKMMIVDDEYILIGSANINQRSMDGARDSEIAMGAYQPYHLAHRQPARGQIHGFRMSLWYEHLGMLDDSFLQPQSEECVRKVNQMADKYWDLFSNESLEHDLPGHLLRYPIDISEEGEITELTGFEFFPDTKARVLGGKADYMPPILTT 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0786 836 SUPERFAMILY Phospholipase D/nuclease 480 765 - -
Lele42g0786 836 SMART C2_3c 38 152 IPR000008 -
Lele42g0786 836 CDD C2_plant_PLD 31 176 - -
Lele42g0786 836 Gene3D C2 domain 35 186 IPR035892 -
Lele42g0786 836 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 35 178 IPR035892 -
Lele42g0786 836 SUPERFAMILY Phospholipase D/nuclease 179 474 - -
Lele42g0786 836 PIRSF PLD_plant 25 836 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lele42g0786 836 Gene3D Endonuclease Chain A 227 471 - -
Lele42g0786 836 Gene3D Endonuclease Chain A 507 728 - -
Lele42g0786 836 PANTHER PHOSPHOLIPASE D 32 824 IPR015679 -
Lele42g0786 836 Pfam C2 domain 37 155 IPR000008 -
Lele42g0786 836 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 354 392 IPR001736 GO:0003824
Lele42g0786 836 ProSiteProfiles C2 domain profile. 17 153 IPR000008 -
Lele42g0786 836 SMART pld_4 682 709 IPR001736 GO:0003824
Lele42g0786 836 SMART pld_4 354 392 IPR001736 GO:0003824
Lele42g0786 836 FunFam Phospholipase D 495 728 - -
Lele42g0786 836 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 682 709 IPR001736 GO:0003824
Lele42g0786 836 FunFam Phospholipase D delta 229 472 - -
Lele42g0786 836 Pfam Phospholipase D Active site motif 354 392 IPR001736 GO:0003824
Lele42g0786 836 Pfam Phospholipase D Active site motif 683 709 IPR001736 GO:0003824
Lele42g0786 836 CDD PLDc_pPLDalpha_2 520 729 - -
Lele42g0786 836 Pfam Phospholipase D C terminal 754 825 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0786 Lele-ChrLele42 20811183 20815091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0786 30 836 Phospholipase D Gene Family (Wang group) AT3G15730 81.728 0.0 1419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0441 38 3591895 3595440 Lele42g0786 42 20811183 20815091 CCT
Lele39g0953 39 18377264 18380997 Lele42g0786 42 20811183 20815091 CCT
Lele40g0415 40 3418491 3421283 Lele42g0786 42 20811183 20815091 CCT
Lele42g0786 42 20811183 20815091 Lele43g0603 43 5392513 5395573 hybridization
Lele42g0786 42 20811183 20815091 Lele44g0557 44 4344107 4347383 hybridization