Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0768 ATGTGGAACAATGGTCAGATTGCTCCACCAGGAACAACTGGCTCTTCCATTCCACCGCCGCCTGCAGCTCAACCGTCGTACACGGTGCTGCCGCCTCCCCCGCCTCCAGCCCCGGCTGAGACGGAGGCTGATGCTGAGGCAAAGCTCGAGGAGAAGGCTAGGAAATGGCAGCAGCTTAATTCGAAGCGGTATAGTGATAAGAGAAAATTTGGGTTTGTTGAGACGCAGAAGGAGGATATGCCCCCCGAACATGTTCGGAAAATCATCAGGGATCATGGGGATATGTCCTCAAAAAAATACCGTCATGATAAACGTGTTTATCTTGGAGCGCTTAAATTTATTCCACATGCAGTTTACAAGCTCCTGGAGAATATGCCTATGCCATGGGAGCAGGTCCGAGACGTGAAGGTCTTGTACCATATATCTGGGGCAATTACTTTTGTTAATGAAATACCATGGGTTGTCGAGCCAATATATCTGGCACAGTGGGGTACTATGTGGATCATGATGAGAAGGGAGAAGAGGGATCGTCGCCATTTCAAGAGGATGCGGTTTCCCCCATTTGATGATGAGGAGCCTCCATTAGATTATGCTGATAATTTGTTAGATGTTGATCCTCTGGAGCCTATTCAGCTTGAATTGGATGAAGAGGAAGATTCTGCTGTATATACTTGGTTTTATGACCATAAACCTCTTGTGAAAACAAAGCTCATAAATGGTCCTAGCTATCGGAAATGGCATCTTTCCCTTCCAATTATGGCCACTCTGCATCGACTTGCAGGACAGCTGTTGTCTGATTTGATTGACCGGAATTATTTCTACTTGTTTGACATGGAGTCATTCTTTACAGCGAAGGCATTGAACATGTGCATACCTGGTGGTCCTAAGTTTGAGCCCCTTTACCGTGACATGGAGAAGGGAGATGAGGACTGGAATGAGTTTAATGACATCAACAAACTTATTATAAGGTCACCTCTAAGGACAGAGTACAGAATTGCATTTCCTCATCTCTATAACAACAGGCCTCGCAAAGTAAAGCTTTGTGTGTACCACACTCCAATGGTCATGTACATAAAAACTGAAGATCCTGATCTACCTGCATTTTATTATGATCCATTGATACACCCAATAACTAGTGCCAGCAAGGAGCGGCGTGAGAAGAGAACTCATGAGGAAGAGGATGAGGAGTGGGAATTGCCAGAAGGTGTGGAACCTTTGCTTAAAGATACACAGCTTTACACGGATACCACTGCTGCTGGTATCTCCCTACTATTGGCTCCTCGTCCTTTTAACATGAGATCTGGCCGCACACGGCGTGCAGAAGATATTCCCCTTGTGTCAGAATGGTATAAGGAGCATTGTCCTCCTTCATATCCAGTTAAAGTTAGAGTTAGTTATCAGAAGTTGCTGAAATGTTTTGTGTTGAATGAGCTGCATCATAGACCTCCTAAGGCTCAGAAAAAGAAGCACCTATTTAGATCTCTCCAAGCGACCAAGTTTTTCCAAACCACTGAACTTGATTGGGTTGAAGCAGGTCTTCAAGTTTGCAGGCAGGGTTATAATATGTTGAATCTTTTGATACACAGAAAAAATTTAAATTATCTTCATCTTGATTACAATTTCAATCTGAAGCCTGTCAAAACCCTTACTACAAAAGAAAGGAAGAAATCACGGTTTGGAAATGCTTTCCATCTTTGCCGTGAAATTCTCCGTTTGACTAAGCTTGTGGTGGATGCCAATGTCCAGTTTCGTCTGGGTAATGTGGATGCATTCCAACTGGCTGATGGTTTGCAGTATACTTTCTCTCATGTTGGTCAGTTGACTGGTATGTATCGGTACAAGTACAGGCTTATGCGGCAAATTAGAATGTGCAAAGACTTGAAGCACTTGATTTACTATCGGTTTAACACCGGGCCTGTTGGGAAAGGGCCTGGCTGTGGAATTTGGGCTCCAATGTGGAGAGTTTGGTTGTTCTTTCTTCGTGGTATTGTTCCGCTTCTTGAAAGATGGTTAGGCAATTTACTTGCGCGGCAGTTTGAGGGACGCCACTCGAAAGGTGTGGCAAAGACTGTTACTAAGCAGCGTGTTGAGAGCCACTTTGACTTAGAGCTTCGAGCAGCAGTTATGCATGATGTGCTTGATGCCATGCCTGAGGGCATTAAGCAGAATAAGGCCAGGACAATATTGCAGCATTTGAGTGAGGCTTGGCGCTGCTGGAAAGCAAATATTCCTTGGAAGGTTCCTGGTCTGCCAGTTCCCATAGAAAACATGATCCTCCGTTATGTGAAGTCTAAAGCAGACTGGTGGACAAATGTTGCCCATTATAATCGTGAACGTATCAGAAGAGGGGCAACTGTTGATAAGACTGTATGTCGTAAAAATCTGGGAAGATTGACACGACTATGGCTGAAGGCAGAGCAGGAACGGCAACACAATTATTTGAAAGATGGTCCATATGTTACTCCTGAAGAAGCTGTAGCTATCTATACGACCACAGTTCATTGGTTGGAATCAAGGAAGTTCTCCCCCATTCCGTTCCCTCCTTTGTCTTACAAGCATGATACTAAGTTGCTAATTCTTGCTCTTGAGAGGCTGAAAGAATCCTACAGTGTTGCAGTGAGGTTGAATCAACTGCAAAGAGAAGAGTTGGGGCTGATTGAACAAGCTTATGACAATCCACATGAGGCTCTATCAAGAATCAAGCGACACCTTCTCACCCAGCGTGCTTTCAAAGAAGTTGGGATAGAGTTTATGGATTTATATAGCTACTTGATTCCAGTTTATGAGATAGAGCCTCTTGAGAAGATTACAGACGCCTATCTTGATCAGTATTTATGGTACGAAGGTGATAAGCGCCATCTCTTTCCCAACTGGATCAAGCCAGCAGATTCAGAGCCACCTCCACTTTTGGTTTATAAATGGTGTCAGGGTATAAACAATCTGCAAGGTATATGGGATACCAGTGAGGGCCAGTGTGTTGTGATGCTGCAGACTAAGTTTGAGAAGTTCTTTGACAAAATTGATTTAACAATGCTAAACAGGCTTCTCCGTCTGGTTCTTGACCATAATATTGCTGATTATGTCACTGCGAAAAACAATGTTGTCTTATCATACAAAGATATGAGCCATACAAATTCATACGGTCTTATACGTGGTCTGCAGTTTGCATCATTTGTTGTCCAATATTATGGACTCGTGCTAGATTTGTTGCTTCTTGGACTTACTAGAGCCAGTGAAATTGCTGGCCCGCCACAGATGCCTAATGAATTCATCACTTACTGGGACACAAAAGTTGAGACAAGGCATCCAATTAGGCTTTATTCTCGGTACATAGATCGGGTTCATATATTATTTCGCTTTACTCATGAGGAGGCTCGAGACCTCATACAGCGTTACCTCACTGAGCATCCTGATCCTAACAATGAGAATATGGTGGGCTACAACAATAAGAAGTGCTGGCCAAGAGATGCAAGAATGAGGCTCATGAAACACGATGTCAATCTTGGGAGGAGTGTCTTCTGGGATATGAAGAACCGTCTTCCTCGAAGTATAACAACTTTAGAGTGGGAGAACAGCTTTGTTTCTGTTTACAGCAAGGATAATCCAAACTTGCTTTTCAGCATGTGTGGATTTGAAGTACGGATACTCCCTAAAATTCGAATGACTCAAGAAGCATTCAGCAATACAAGAGATGGTGTTTGGAATTTACAAAATGAACAGACCAAAGAAAGGACGGCAGTTGCCTTTTTAAGAGTTGATGATGAACACATGAAAGTGTTTGAGAATCGGGTTAGGCAGATTCTCATGTCTTCCGGATCTACTACTTTTACAAAAATTGTCAATAAATGGAACACCGCTTTGATAGGTCTTATGACATACTTCCGGGAGGCAACTGTACACACTCAAGAGCTGTTAGATTTGCTGGTTAAATGTGAAAATAAGATTCAGACTCGTATTAAGATTGGATTGAACTCAAAGATGCCTAGCAGATTTCCTCCTGTCATTTTCTACACCCCAAAAGAAATTGGAGGACTTGGTATGTTGTCCATGGGTCACATTTTGATTCCACAAAGCGATCTCCGGTATAGTCAGCAGACTGATGTTGGCGTGACGCACTTCAGGAGTGGGATGAGTCATGAAGAGGACCAGTTGATTCCCAACCTTTATCGATATATTCAGCCTTGGGAGAGTGAATTCATTGACTCACAGCGCGTCTGGGCTGAATATGCATTGAAGAGGCAGGAGGCACAAGCACAAAATAGGCGTCTGACCCTTGAAGATCTGGAAGATTCGTGGGATAGAGGTATACCACGTATAAACACTTTATTCCAAAAGGATAGACACACCTTGGCTTATGATAAAGGATGGAGGGTGCGTACAGACTTCAAGCAGTACCAGGTTCTGAAACAAAACCCTTTCTGGTGGACACACCAGAGGCATGATGGGAAGTTGTGGAACTTGAACAATTACCGTACTGATGTTATTCAAGCCCTTGGAGGTGTTGAAGGAATTCTTGAACATACTTTATTCAAAGGAACATACTTTCCAACCTGGGAAGGTCTGTTTTGGGAAAAGGCATCAGGCTTTGAGGAATCTATGAAGTACAAGAAGTTAACAAATGCTCAGAGATCTGGTCTTAACCAGATACCTAACCGTAGGTTTACTCTTTGGTGGTCACCAACCATAAATCGAGCCAATGTTTATGTGGGGTTCCAGGTGCAGTTAGATCTGACTGGTATTTTCATGCATGGGAAGATACCTACTTTGAAGATATCACTTATTCAGATATTCCGAGCCCATTTGTGGCAAAAGATCCATGAGAGTGTTGTCATGGATCTGTGTCAGGTTTTGGATCAGGAATTGGATGCTCTGGAGATTGAGACTGTCCAGAAGGAAACAATCCATCCAAGGAAAAGTTACAAAATGAACAGCTCTTGTGCAGATGTCCTTCTGTTTGCTGCCCATCGATGGCCAATGTCAAAGCCTAGTCTGGTAGCTGAATCTAAGGATGTTTTTGATCAGAAGGCAAGCAATAAATACTGGATTGATGTACAGCTTAGATGGGGGGATTATGACTCTCATGATATTGAGCGTTACACACGGGCCAAATTTATGGATTATACAACAGATAATATGTCTATATATCCATCTCCTACAGGGGTGATGATTGGCATTGATTTGGCGTATAACTTGCACTCTGCATTTGGTAACTGGTTCCCTGGTTCAAAGCCACTGCTTCAGCAGGCCATGAATAAGATCATGAAGTCAAATCCTGCGTTATATGTCTTGAGAGAGCGTATAAGGAAGGGGCTTCAGTTGTATTCTTCTGAGCCTACTGAACCATACTTGTCATCCCAAAACTATGGAGAAATATTCAGCAATCAGATTATATGGTTTGTTGATGACACTAATGTGTACCGTGTTACAATCCATAAGACCTTTGAAGGAAATCTTACAACAAAGCCCATCAATGGTGCCATCTTCATTTTTAATCCAAGGACTGGCCAATTGTTTCTGAAGGTTATTCATACAAGTGTCTGGGCTGGTCAGAAGCGTCTTGGTCAGCTGGCCAAGTGGAAAACAGCAGAAGAAGTTGCTGCTCTTGTACGTTCTTTGCCAGTTGAAGAACAACCCAAGCAAATTATTGTCACTCGTAAAGGAATGTTGGATCCTTTAGAAGTTCACCTTCTGGATTTCCCCAACATCGTTATTAAAGGAAGTGAGCTGCAACTTCCATTCCAAGCATGCTTGAAGATTGAGAAATTTGGGGATCTTATTTTGAAGGCTACAGAACCTCAAATGGTTTTGTTCAACATTTATGATGACTGGCTGAAAAGTATTTCATCTTACACCGCATTCTCCAGGTTGATTTTGATTCTCCGTGCTCTTCACGTGAATAATGAGAAGGCGAAGATGCTGCTAAAGCCTGACAAAACAATTATTACTGAACCACATCACATCTGGCCTTCTCTCAGTGATGACCAGTGGATGAAGGTGGAGGTTGCATTAAGAGATCTCATACTCTCAGATTATGCCAAGAAGAACAATGTCAACACATCTGCCTTGACTCAGTCTGAGATTCGTGACATTATACTTGGAGCTGAGATTACTCCACCTTCTCAACAGCGGCAACAGATAGCAGAGATTGAGAAACAGGCTAAAGAGGCCAGTCAACTGACAGCTGTAACAACAAGGACGACTAATGTTCATGGTGATGAGCTTATTGTCACCACCACTAGTCCCTATGAGCAGGCTGCATTTGGTTCTAAGACTGACTGGCGTGTCAGAGCAATTTCAGCAACAAATCTGTACCTTCGTGTTAATCATATTTACGTGAACTCTGAGGATATAAAGGAAACTGGTTACACCTACATCATGCCCAAGAACATTTTGAAGAAGTTTATCTGCATAGCTGATCTTCGAACTCAAATTGCTGGCTACCTGTATGGTATAAGTCCTCCAGACAACCCACAGGTTAAAGAGATCCGCTGCATTGTGATGCCACCACAATGGGGGACTCATCAGCAAGTCCATCTCCCATTAGCTCTTCCAGAGCATGATTTCTTGAATGACTTGGAGCCTTTGGGATGGATGCATACTCAACCAAACGAACTTCCACAGTTGTCTCCTCAGGATCTCACTTCACATGCTAAGGTCCTAGAGAACAACAAGCAATGGGATGGCGAGAAGTGCATTATCTTGACTTGCAGTTTTACTCCAGGGTCTTGTTCATTAACTGCATACAAGCTCACTCCATCTGGGTATGAGTGGGGACGTGTCAATAAGGATACTGGAAGCAATCCTCATGGTTACCTTCCTACCCACTATGAGAAGGTTCAGATGCTTCTCAGCGATCGCTTCTATGGTTTCTACATGGTTCCTGATAATGGACCGTGGAATTACAACTTCATGGGGGTGAGACACGCGTCCGGGATGAAGTATGGAGTGAAGTTGGGGACACCTCGAGAGTATTACCATGAAGATCACAGACCAACTCATTTCTTAGAGTTCAGCAACATGGAGGAAGGGGAAACAATTGCCGAGGGAGATCGCGAGGATACATTTACTTGA 7071 0.4325 MWNNGQIAPPGTTGSSIPPPPAAQPSYTVLPPPPPPAPAETEADAEAKLEEKARKWQQLNSKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYYDPLIHPITSASKERREKRTHEEEDEEWELPEGVEPLLKDTQLYTDTTAAGISLLLAPRPFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGIWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFDKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIVMPPQWGTHQQVHLPLALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKVLENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFYGFYMVPDNGPWNYNFMGVRHASGMKYGVKLGTPREYYHEDHRPTHFLEFSNMEEGETIAEGDREDTFT 2356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0768 2356 SMART pad1_6 2119 2253 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele42g0768 2356 Gene3D - 1601 1772 - -
Lele42g0768 2356 MobiDBLite consensus disorder prediction 13 40 - -
Lele42g0768 2356 CDD RNase_H_like_Prp8_IV 1786 2036 IPR021983 -
Lele42g0768 2356 FunFam Pre-mRNA-processing-splicing factor 8 2078 2356 - -
Lele42g0768 2356 FunFam Pre-mRNA-processing-splicing factor 8 1942 2040 - -
Lele42g0768 2356 PANTHER PRE-MRNA SPLICING FACTOR PRP8 40 2344 IPR027652 GO:0000398|GO:0005681
Lele42g0768 2356 SUPERFAMILY Ribonuclease H-like 1783 2035 IPR012337 -
Lele42g0768 2356 SUPERFAMILY Ribonuclease H-like 1016 1273 IPR012337 -
Lele42g0768 2356 Pfam PRO8NT (NUC069), PrP8 N-terminal domain 77 228 IPR012591 GO:0000398
Lele42g0768 2356 MobiDBLite consensus disorder prediction 1 53 - -
Lele42g0768 2356 Pfam U6-snRNA interacting domain of PrP8 1462 1620 IPR019580 GO:0017070
Lele42g0768 2356 FunFam Pre-mRNA-processing-splicing factor 8 1789 1941 - -
Lele42g0768 2356 Pfam PRP8 domain IV core 1780 2009 IPR021983 -
Lele42g0768 2356 Gene3D - 1203 1323 IPR042516 -
Lele42g0768 2356 Gene3D Cytidine Deaminase, domain 2 2078 2356 - -
Lele42g0768 2356 Coils Coil 1411 1431 - -
Lele42g0768 2356 Pfam PROCT (NUC072) domain 2232 2353 IPR012984 -
Lele42g0768 2356 Gene3D - 1781 1941 IPR043172 -
Lele42g0768 2356 FunFam Pre-mRNA-processing-splicing factor 8 1601 1772 - -
Lele42g0768 2356 CDD MPN_PRP8 2087 2337 - -
Lele42g0768 2356 Pfam RNA recognition motif of the spliceosomal PrP8 1005 1095 IPR019582 GO:0003723
Lele42g0768 2356 Pfam PROCN (NUC071) domain 415 820 IPR012592 GO:0000398
Lele42g0768 2356 Gene3D - 1942 2040 IPR043173 -
Lele42g0768 2356 ProSiteProfiles MPN domain profile. 2123 2254 IPR037518 -
Lele42g0768 2356 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 2121 2219 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele42g0768 2356 FunFam Pre-mRNA-processing-splicing factor 8 1203 1323 - -
Lele42g0768 2356 Pfam U5-snRNA binding site 2 of PrP8 1230 1363 IPR019581 GO:0030623
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0768 Lele-ChrLele42 20702924 20714452 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0768 42 20702924 20714452 Lele38g0479 38 3857618 3859711 CCT
Lele42g0768 42 20702924 20714452 Lele39g0917 39 18124479 18128989 CCT
Lele42g0768 42 20702924 20714452 Lele40g0452 40 3723035 3725128 CCT
Lele42g0768 42 20702924 20714452 Lele43g0621 43 5485961 5498154 hybridization
Lele42g0768 42 20702924 20714452 Lele44g0573 44 4447833 4459322 hybridization