Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0766 ATGGCCGTTGTTTCTTTCTCTTTTCAACCTCATCTGCGTCCCTCCTCCGCTCCTTCTTCTTCTTCGTCTTCGTCGTCGTCCTCTTTTTTGTGTGGTGGTGTCCATCTTCTGACACATAAGAACTTCATCTCTATCCATTCACCTTCCCATTTTTCTTCTTTAACTTTAAATAATAAGTCCTCCTCGAGGAGCTTCCGAACGGCGATTGCTGCTTCTGGCGACTATTATGCGACTCTCGGAGTCTCCAAATCCGCGACTAACAAGGAGATTAAGGCGGCTTATCGAAAGTTAGCTCGTCAGTACCATCCTGATGTGAACAAGGAACCTGGAGCTATTGACAAGTTCAAGGAAATTAGTGCTGCATATGAGGTGCTATCAGATGATAAGAAGAGGGCTTTGTATGATCAATATGGAGAGGCTGGAGTCAAGAGTGCGGTAGGAGGAGGATCAAGTGCTTATACGACTAATCCATTTGATTTGTTTGAGACATTTTTTGGGCCGAGTATGGGTGGCTTTGGTGGCATGGATCCAACTGGATTTGGTACACGCCGCCGTACTACTGTTACTAAGGGTGGAGACATTCGTTATGATATTTTGTTAGAATTTTCTGAGGCAATATTTGGCACTGAAAAGGAATTTGAGCTTTCCCATTTGGAAAAATGTGAAGCTTGTAATGGTACTGGAGCAAAGATTGGCTCCAAGATGAGGATATGTTCGACTTGTGGAGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGTTTGTTCTCACAGGTTTCCGTATGTCCAAACTGTGGAGGGGATGGTGAAATCATATCTGCATTTTGTCGTAAATGTAATAGTGAAGGGCGTACTCGGGTTAAGAGAAATATTAAAGTAAAAATTCCTCCAGGGGTTAGCTCAGGCAGTATTCTGAGAGTTGCCGGGGAGGGTGATGCTGGACCTCGAGGGGGTCCTCCTGGAGATCTATTTGTGTATCTTGAAGTGGAAGAGATTCCAGGAATTCAAAGAGATGGCATTAATCTCTCTTCAACGTTAACAATCAGTTACCTGGATGCCATACTAGGGGTTGTTGTCAAGGTAAATACAGTTGAAGGCATTTCTGAACTACAAATTCCCCCTGGTACCCAACCTGGAGACGTCCTTGTCCTTGAAAGGAAAGGTGCACCAAAATTAAACAAACCATCCATACGTGGTGACCACTTATTTACAGTTAAAGTTACAATACCAAAACGTATCAGTTTAAAGGAGCGTGAGTTGCTTGAGGAACTTGCTTCAAGAGGCAGCAAAACAAGTAGCCGTTCAAAACCCCGTCCTAGCATTCACTCTTCCAAGGGAAGGGCTGAAGATCCTGTAGCTAAAAGTGCTGAGAGTCCAACAGCGGTTGAAGAAAAAACTGAGCAGTCAGAAGACCAAGATGACATATGGAACAAATTAAAGAATTTTGCTGGGTCCGTGGCAAATGGAGCTCTGAAGTGGCTAAAAGATAACCTGTAG 1503 0.4411 MAVVSFSFQPHLRPSSAPSSSSSSSSSSFLCGGVHLLTHKNFISIHSPSHFSSLTLNNKSSSRSFRTAIAASGDYYATLGVSKSATNKEIKAAYRKLARQYHPDVNKEPGAIDKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTRRRTTVTKGGDIRYDILLEFSEAIFGTEKEFELSHLEKCEACNGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEIISAFCRKCNSEGRTRVKRNIKVKIPPGVSSGSILRVAGEGDAGPRGGPPGDLFVYLEVEEIPGIQRDGINLSSTLTISYLDAILGVVVKVNTVEGISELQIPPGTQPGDVLVLERKGAPKLNKPSIRGDHLFTVKVTIPKRISLKERELLEELASRGSKTSSRSKPRPSIHSSKGRAEDPVAKSAESPTAVEEKTEQSEDQDDIWNKLKNFAGSVANGALKWLKDNL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0766 500 SUPERFAMILY HSP40/DnaJ peptide-binding domain 338 423 IPR008971 GO:0006457|GO:0051082
Lele42g0766 500 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 287 IPR036410 -
Lele42g0766 500 CDD DnaJ_C 193 415 - -
Lele42g0766 500 ProSiteProfiles dnaJ domain profile. 74 138 IPR001623 -
Lele42g0766 500 ProSiteProfiles Zinc finger CR-type profile. 208 290 IPR001305 GO:0031072|GO:0051082
Lele42g0766 500 Gene3D - 337 429 - -
Lele42g0766 500 PRINTS DnaJ domain signature 94 109 IPR001623 -
Lele42g0766 500 PRINTS DnaJ domain signature 130 149 IPR001623 -
Lele42g0766 500 PRINTS DnaJ domain signature 76 94 IPR001623 -
Lele42g0766 500 PRINTS DnaJ domain signature 110 130 IPR001623 -
Lele42g0766 500 TIGRFAM DnaJ_bact: chaperone protein DnaJ 74 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele42g0766 500 MobiDBLite consensus disorder prediction 1 25 - -
Lele42g0766 500 Gene3D - 221 285 - -
Lele42g0766 500 CDD DnaJ 74 127 IPR001623 -
Lele42g0766 500 Hamap Chaperone protein DnaJ [dnaJ]. 71 484 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele42g0766 500 FunFam Putative Mitochondrial DnaJ chaperone 279 327 - -
Lele42g0766 500 ProSitePatterns Nt-dnaJ domain signature. 115 134 IPR018253 -
Lele42g0766 500 Gene3D DnaJ domain 71 175 IPR036869 -
Lele42g0766 500 Pfam DnaJ central domain 221 285 IPR001305 GO:0031072|GO:0051082
Lele42g0766 500 FunFam Chaperone protein dnaJ A6 chloroplastic 221 285 - -
Lele42g0766 500 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 343 IPR008971 GO:0006457|GO:0051082
Lele42g0766 500 CDD DnaJ_zf 221 285 IPR001305 GO:0031072|GO:0051082
Lele42g0766 500 Pfam DnaJ C terminal domain 194 412 IPR002939 -
Lele42g0766 500 Gene3D - 191 327 - -
Lele42g0766 500 MobiDBLite consensus disorder prediction 9 25 - -
Lele42g0766 500 FunFam Molecular chaperone Hsp40/DnaJ family protein 337 429 - -
Lele42g0766 500 Pfam DnaJ domain 74 135 IPR001623 -
Lele42g0766 500 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 24 436 - -
Lele42g0766 500 FunFam Chaperone protein dnaJ A6 chloroplastic 71 177 - -
Lele42g0766 500 MobiDBLite consensus disorder prediction 426 475 - -
Lele42g0766 500 SUPERFAMILY Chaperone J-domain 72 180 IPR036869 -
Lele42g0766 500 SMART dnaj_3 73 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0766 Lele-ChrLele42 20684308 20691647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0766 75 181 C2H2 Transcription Factor Family AT1G74250 36.842 1.07e-09 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0766 42 20684308 20691647 Lele43g0623 43 5508187 5515420 hybridization
Lele42g0766 42 20684308 20691647 Lele44g0575 44 4472084 4478148 hybridization