Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0756 ATGGAAGTAGATGATGATTACGTGGAGTATGTGCCCGTGGCCAAACGGAGGGCCATGGATGCTCAGAAGGTTCTTGAACGAAAAGGGAAATCTTCCTCCACGGTTGATGACGATTTTTGGGAGAATTCAAGAATGGCGGAAGCTAAACCAAGTCTTCTGGTTAAGGCTTCCCTGTTGAAACGGGATCAACCTGAAATTAGTCCGACAGAGCAGGTTGTTCGACAGGAAAAGGAGATGATTGAGAACTTATCTGATCGAAAAACTCTAATGTCTGTTCGAGAATTGGCTAAGGGAATCACTTATACAGAGCCTTTGCCTACAGGATGGAAGCCACCTTTACCCATTAGAAGAATGTCTAAAAAGCAACGTGATTTGATTCGGAAGCAGTGGCATATAATAGTTGACGGTGAAGATATCCCACCTCCAATTAAGAATTTCAAGGATATGAGGTTTCCTGAGTCAATTTTGAACAAGTTGAAAGTCAAAGGGATTGTGCAGCCTACACCTATTCAAGTGCAAGGCCTTCCTGTGATCTTATCTGGGAGGGATATGATTGGGATTGCATTCACAGGATCAGGGAAAACTCTTGTCTTTGTATTGCCAATGATCATGCTGGCTTTGCAGGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGTTTGATTGTTTGTCCTTCGAGGGAACTCGCTAGACAAACTTACGAGGTGGTCGAACAGTTTCTGATACCTTTGAGAGAAGCTGGACATCCTGAACTTAGGCCTTTGCTTTGTATTGGTGGAGTGGAAATGAGATCTCAGCTAGATGTTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACCCCCGGGAGGTTGAAGGATATGCTGGCAAAGAAAAAAATGAACCTTGATAGTTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTCGAAGATGACATAAGAGAAGTGTTTGATCACTTGAAAGCTCAAAGGCAGACTCTCTTATTTTCTGCCACCATGCCAACTAAGATTCAGAATTTTGCTAGAAGTGCCCTAGTGAAACCTGTTATTGTCAATGTGGGGCGAGCAGGGGCGGCAAATCTTGATGTAATCCAGGAAGTGGAGTATGTTAAGCAAGAGGCGAAAATAGTTTATCTGCTTGAGTGCCTGCAAAAAACCCCACCTCCGGTTTTAATATTCTGTGAGAACAAAGCAGATGTGGATGACATTCATGAATATCTTCTCCTTAAAGGAGTTGGAGCAGTGGCTGTTCATGGAGGCAAAGATCAGGAAGAAAGAGAGTATGCCATTGCGGCCTTTAAGTCTGGGAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAGGGGTTGGATTTCCCTGATATTCAGCATGTTATTAACTATGACATGCCTGATGAGATTGAAAATTATGTTCATAGGATTGGTCGAACCGGAAGATGTGGCAAGACAGGCATAGCAACAACATTCATAAACAAGAATCAAAGTGAGACAACATTGCTTGATTTGAAACATCTGTTGCAAGAAGCGAAACAGCGCATTCCCCCTGTTTTAGCAGATTTGAATGATCCAATGGATGATAATGATGAAATCACTGGTAAAAGTGGGGTCAAGGGTTGTGCCTATTGTGGTGGGCTTGGTCACCGCATTCGCGACTGTCCCAAGCTAGAACATCAGAAAAGCATGGCCATTGCAAATAGCAGAAGGGACTATTTTGGTTCTGGCGGATATAGGGGAGAGATCTGA 1770 0.4316 MEVDDDYVEYVPVAKRRAMDAQKVLERKGKSSSTVDDDFWENSRMAEAKPSLLVKASLLKRDQPEISPTEQVVRQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLPIRRMSKKQRDLIRKQWHIIVDGEDIPPPIKNFKDMRFPESILNKLKVKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPIVPGEGPFGLIVCPSRELARQTYEVVEQFLIPLREAGHPELRPLLCIGGVEMRSQLDVVKKGVHIVVATPGRLKDMLAKKKMNLDSCRYLTLDEADRLVDLGFEDDIREVFDHLKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVGAVAVHGGKDQEEREYAIAAFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPDEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLADLNDPMDDNDEITGKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANSRRDYFGSGGYRGEI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0756 589 SMART ultradead3 163 374 IPR014001 -
Lele42g0756 589 Coils Coil 501 521 - -
Lele42g0756 589 Pfam Helicase conserved C-terminal domain 383 490 IPR001650 -
Lele42g0756 589 FunFam Probable ATP-dependent RNA helicase DDX41 369 531 - -
Lele42g0756 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 505 IPR027417 -
Lele42g0756 589 CDD DEADc_DDX41 155 360 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lele42g0756 589 FunFam Probable ATP-dependent RNA helicase DDX41 111 360 - -
Lele42g0756 589 SMART c2hcfinal6 547 563 IPR001878 GO:0003676|GO:0008270
Lele42g0756 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 359 IPR014001 -
Lele42g0756 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 530 IPR001650 -
Lele42g0756 589 CDD SF2_C_DEAD 371 499 - -
Lele42g0756 589 Pfam DEAD/DEAH box helicase 168 347 IPR011545 GO:0003676|GO:0005524
Lele42g0756 589 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 110 530 - -
Lele42g0756 589 Pfam Zinc knuckle 547 563 IPR001878 GO:0003676|GO:0008270
Lele42g0756 589 ProSiteProfiles Zinc finger CCHC-type profile. 548 563 IPR001878 GO:0003676|GO:0008270
Lele42g0756 589 Gene3D - 369 531 IPR027417 -
Lele42g0756 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Lele42g0756 589 SMART helicmild6 409 490 IPR001650 -
Lele42g0756 589 SUPERFAMILY Retrovirus zinc finger-like domains 547 568 IPR036875 GO:0003676|GO:0008270
Lele42g0756 589 Gene3D - 113 363 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0756 Lele-ChrLele42 20597260 20599029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0756 132 529 Eukaryotic Initiation Factors Gene Family AT3G19760 31.920 1.34e-57 197