Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0740 ATGGGTTTTTTCACAGACTTCGCTCCTACAGGTAAATCTTCAACCTTCTCTTCCCCAATCGCTACCTCCAACAGACCAGAATTCGCGCCACAGCCTCTTCAAGAGGATGGCAACACTAGTTCGATTGCTCCGAGGTCGGAGGGCGAGCCAACGATGTCCAGATTCCCCAAACACAAAAAGGATCGGCGAGAAAAGCCAGAGCTCGAGTTGAAACCTCATGCTCGTCTCTTGGAAGGTGATCCTCTCAAGATTGATCAGTCTGCACTCACTGGTGAATCCTTGCCCGTCACAAAGAATCCGGGGGATGAAGTCTTCTCTGGTTCTACTGTTAAGCAAGGTGAGATTGAAGCCATTGTAATTGCCACTGGTGTCCACACCTTCTTTGGTAAGGCTGCTCACTTAGTGGACAGCACCAACCAAGTTGGACACTTCCAAAAGCTTTTTGAAAAAGATATAGACAAGGACATGTTGATTTTGCTTGGAGCTAGGGCCTCTAGGGTGGAGAACCAGGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGATCCAAAGGAGGCAATTGGCATAGAGTTAGCAAAGATCATCTCTCTCTGCAATCTCCGGGGTGATATGTTGAAAAGATCTCATGCCATTATTGACAAGTTCGCTGACCGTGGTCTTCGTTCTCTTGCTGTTTGTAGACAAGAAGTGCCAGAGAAGACAAAGGAAAGTGCAGGAGGACCATGGCATTTTGTTGGTCTCTTGCCTCTCTTTGATCCACCAAGACATGACAGTGCAGAGACCATCAGAAAAGCTCTTCAACTCGGAGTAAATGTGAAGATGATCACCGGTGATCAACTCGCTATCGGTAAAGAGACTGGTCGCAGGCTTGGCATGGGAAGCAACATGTACCCTTCTTCCTCTCTCCTTGGTGAACACAAGGATGAGTCTGTTGCTGCTCTTCCCATTGATGAGCTTATTGAAAAGGCTGATGGCTTTGCTGGAGTATTTCCTGAGCACAAGTACGAGATTGTGAAGAGGCTGCAAGATAGGAAGCACATTTGTGGCATGACTGGAGATGGTGTGAATGATGCACCTGCGTTGAAGAGAGCAGATATTGGAATTGCAGTGGCTGATGCAACCGATGCAGCTCGAAGCGCGTCTGACATAGTCCTAACAGAACCCGGTTTGAGTGTGATTATAAGTGCAGTGTTAACAAGCAGGGCTATTTTCCAGAGGATGAAGAACTACACAATTTATGCTGTCTCTATTACAATCCGTATTGTTCTGGGATTTATGCTCCTTGCTCTTATCTGGAAATACGATTTCTCGCCTTTCATGGTCTTGATCATCGCTATACTCAATGATGGGACCATCATGACCATTTCCAAGGACAGAGTGAAGCCATCTCCAATTCCTGATTCCTGGAAACTCAATGAGATTTTTGCTACTGGCGTTGTTCTTGGTGCCTACCTTGCTGAACGTTTTGGAGTTAGATCCATCAGACACAACCCAGAAGAGCTCACTGCAGCTGTTTACCTTCAAATCGCGACCTTATTAGCCGTGTATGCAAACTGGGAATTTGCAAGGATTAAAGGAGTTGGGTGGGGCTGGGCTGGTGTGATTTGGCTCTACAGCATCATCTTCTACATTCCTTTAGATATCTTAAAGTTCATCATCCGATATGCATTGAGTGGCAAGGCCTGGAACAACATTACTGAGACCAGGGTTGCTTTCACAAACAAGAAAGACTATGGAAGGGGAGAGAGAGAAGCACAATGGGCTGCAGAACAACGCACAATGCATGGTTTGAATCCTCCTGAAGCAGAAGATATCTTGAAGGACAAAACAGATTACAGAGAACTCACTGAAATTGCAGAACAAGCAAGGAAACGTGCTGAAGTTGCAAGGTTGAGGGAGCTTCACACACTGAAGGGGCATGTGGAATCTGTGGTGAAGCTAAAGGGACTTGATATTGAGACAATTCAGCAGAACTACACTGTGTGA 1989 0.461 MGFFTDFAPTGKSSTFSSPIATSNRPEFAPQPLQEDGNTSSIAPRSEGEPTMSRFPKHKKDRREKPELELKPHARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTVKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVGHFQKLFEKDIDKDMLILLGARASRVENQDAIDACIVGMLGDPKEAIGIELAKIISLCNLRGDMLKRSHAIIDKFADRGLRSLAVCRQEVPEKTKESAGGPWHFVGLLPLFDPPRHDSAETIRKALQLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESVAALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKYDFSPFMVLIIAILNDGTIMTISKDRVKPSPIPDSWKLNEIFATGVVLGAYLAERFGVRSIRHNPEELTAAVYLQIATLLAVYANWEFARIKGVGWGWAGVIWLYSIIFYIPLDILKFIIRYALSGKAWNNITETRVAFTNKKDYGRGEREAQWAAEQRTMHGLNPPEAEDILKDKTDYRELTEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQNYTV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0740 662 SUPERFAMILY Calcium ATPase, transmembrane domain M 401 558 IPR023298 -
Lele42g0740 662 Gene3D - 70 139 - -
Lele42g0740 662 Coils Coil 613 633 - -
Lele42g0740 662 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 195 258 IPR023299 GO:0000166
Lele42g0740 662 MobiDBLite consensus disorder prediction 1 82 - -
Lele42g0740 662 PANTHER CALCIUM-TRANSPORTING ATPASE 194 594 - -
Lele42g0740 662 SUPERFAMILY Calcium ATPase, transduction domain A 75 135 IPR008250 -
Lele42g0740 662 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 327 435 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g0740 662 FunFam Plasma membrane ATPase 246 400 - -
Lele42g0740 662 MobiDBLite consensus disorder prediction 51 80 - -
Lele42g0740 662 FunFam Membrane H(+)-ATPase1 192 252 - -
Lele42g0740 662 Gene3D - 191 248 IPR023299 GO:0000166
Lele42g0740 662 PRINTS H+-transporting ATPase (proton pump) signature 383 408 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g0740 662 PRINTS H+-transporting ATPase (proton pump) signature 209 227 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g0740 662 PRINTS H+-transporting ATPase (proton pump) signature 352 368 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g0740 662 PRINTS H+-transporting ATPase (proton pump) signature 324 340 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g0740 662 SUPERFAMILY HAD-like 244 398 IPR036412 -
Lele42g0740 662 MobiDBLite consensus disorder prediction 8 47 - -
Lele42g0740 662 Pfam E1-E2 ATPase 75 149 - -
Lele42g0740 662 Pfam haloacid dehalogenase-like hydrolase 246 366 - -
Lele42g0740 662 Gene3D - 488 557 - -
Lele42g0740 662 Gene3D - 611 662 - -
Lele42g0740 662 Gene3D - 249 389 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0740 Lele-ChrLele42 20424277 20429811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0740 146 662 Primary Pumps ATPases AT3G42640 68.823 0.0 813