Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0731 ATGGGCAATGAGGAAACTTCAGAAACTCCAGGGTCTTCTGGTAGTTCACTGTTTGGTAAAAAATCAATTCTCATGAACAAGTGTCTCGGTGCTGAAGAATGGACCTTAGAAGGAGGCTTACCCAAAGTCTCTTGCTCATTGCCTTCCCCTCCTGTCCCTCTTAGAAGAAAGGTAGGAGCTGAGTTTATAGGAACTTCGATTCTCATGTTTGCTGGTATTTCCACTGCTATTGTGAACCAAAGGACACAAGGTTCTGAGACTCTAATTGGGTGCGCTGCCTCTACTGGTCTTGCTGCTATGGTCGTCATTATTGCCACCGGTCACATCTCCGGTGCTCATCTCAACCCTGCAGTCACCATTTCCTTCGCTGCTTTAAAGCACTTCCCATGGAAACATGTTCCTGTGTATGTTGGCGCACAATTAATGGCATCCATATGTGCAGCATTTGCATTAAAAGGGATATTTCACCCCTTCATGAGTGGAGGAGTCACAGTTCCTTCAGGAGGAAATGCGCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTCATTCTCATGTTTGTGGTCACAGCAGTGGCCACCGACACAAGATCTGTGGGGGAGCTTGCTGGAATTGCAGTGGGAGCGACTGTCATGCTCAACATACTTATAGCCGGGCCAGCAACAGGAGGATCAATGAACCCAGTGAGAACACTAGGTCCAGCTATTGCTGCAAGTAACTACAAAGGCATATGGGTCTACCTCATTGCTCCTATACTAGGAGCTCTTGGTGGAGCAGGAATCTACACTGCAGTCAAGCTTCCAGAAGCAGACGGTGAAACACAAGGAAAGGCTTCAACACCCCGAAGCTTCAGAAAGTGA 858 0.472 MGNEETSETPGSSGSSLFGKKSILMNKCLGAEEWTLEGGLPKVSCSLPSPPVPLRRKVGAEFIGTSILMFAGISTAIVNQRTQGSETLIGCAASTGLAAMVVIIATGHISGAHLNPAVTISFAALKHFPWKHVPVYVGAQLMASICAAFALKGIFHPFMSGGVTVPSGGNAQAFALEFIISFILMFVVTAVATDTRSVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIAASNYKGIWVYLIAPILGALGGAGIYTAVKLPEADGETQGKASTPRSFRK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0731 285 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Lele42g0731 285 FunFam Aquaporin NIP2-1 44 276 - -
Lele42g0731 285 CDD MIP 56 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0731 285 SUPERFAMILY Aquaporin-like 53 269 IPR023271 -
Lele42g0731 285 Pfam Major intrinsic protein 54 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0731 285 Gene3D Glycerol uptake facilitator protein. 50 277 IPR023271 -
Lele42g0731 285 PANTHER AQUAPORIN NIP2-1 47 269 IPR034294 -
Lele42g0731 285 PRINTS Major intrinsic protein family signature 95 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0731 285 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0731 285 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0731 285 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0731 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele42g0731 285 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0731 Lele-ChrLele42 20353890 20356199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0731 9 285 Major Intrinsic Protein MIP AT1G80760 70.408 1.69e-138 391