Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0728 ATGAATTGTTTCCTTTGCAGAGAAGAGCCTGTTGTTGCTGCTGAGACAGCTGCACCAATTGTAGGTGAGCCAATGGACATCATGACTGCGTTGCAGCTTGTGCTGAGAAAATCACTGGCTTATGGTGGTCTCTCTCGTGGCCTTCATGAAGGCGCAAAGATTATTGAAAAGCATGCTGCTCAGCTCTGTGTTCTCGCAGAGGATTGTGACCAACCCGACTACGTAAAACTTGTCAAAGCCCTATGTGCTGAGCACAGTGTTAGCTTGCTGACAGTTGCAAGCGCAAAAACCCTCGGAGAGTGGGCCGGTTTGTGTAAGATCGACGGGGAAGGGAAGGCGAGAAAGGTGGTCGGTTGCTCGTGTGTGGTTGTCAAGGATTTCGGAGAGGAACATGAAGCCTATAACGTTGTTTTGCAGCATGTTAAAGCTCAGTGGTTAAGAGATAAGACAGCTAATAGTTACGTTTGTCGGGTTGATATCTCCGACATCGATGGTGGACCCTAA 504 0.4841 MNCFLCREEPVVAAETAAPIVGEPMDIMTALQLVLRKSLAYGGLSRGLHEGAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVASAKTLGEWAGLCKIDGEGKARKVVGCSCVVVKDFGEEHEAYNVVLQHVKAQWLRDKTANSYVCRVDISDIDGGP 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0728 167 PANTHER 40S RIBOSOMAL PROTEIN S12 19 143 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele42g0728 167 ProSitePatterns Ribosomal protein S12e signature. 30 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele42g0728 167 PRINTS Ribosomal protein S12E family signature 114 127 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele42g0728 167 PRINTS Ribosomal protein S12E family signature 48 64 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele42g0728 167 PRINTS Ribosomal protein S12E family signature 34 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele42g0728 167 PRINTS Ribosomal protein S12E family signature 89 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele42g0728 167 FunFam 40S ribosomal protein S12 11 144 - -
Lele42g0728 167 SUPERFAMILY L30e-like 24 142 IPR029064 -
Lele42g0728 167 Gene3D - 12 144 IPR029064 -
Lele42g0728 167 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 123 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0728 Lele-ChrLele42 20329261 20331119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0728 21 144 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.581 1.76e-63 190