Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0725 ATGGCCGTCACTGGTTCAGCATCTAGACAGCCGCAATTCATTATGAGCACTGGAAACCGAAGCTCTTCCGATGCTCCTCTCATCGAAAACTCCGACACTGATCAAATTGTCATCCCTGATAAAACAAGCTGGAAGAACTTATTTGCATATATGGGTCCCGGGTTTCTGGTTTCTATTGCATATATAGACCCAGGAAACTTTGAAACGGATCTTCAGTCAGGGGCACAATATAAATATGAGTTACTTTGGATTATATTGGTGGCCTCTTGTGCTGCTCTTATAATTCAATCAATGGCAGCCAATTTAGGAGTTGTAACCGGAAAACATTTAGCAGAGCATTGTAGGACTGAGTATCCTCGGTCAACAAACTTTGTCTTATGGGTTATTGCTGAAATTGCCATAGTGGCTTGTGACATTCCTGAAGTGATCGGAACAGCCTTCGCATTGAACATGCTCTTCAACATACCTGTTTGGATCGGTGTTCTTTTAACAGGGCTCAGTACACTGATCCTCTTAGCATTACAGCAATATGGGGTGAGGAAACTTGAGTTCTTGATTGCATTTCTGGTGTTTACAATTGCTGCGTGCTTTTTTGTCGAACTTGGGTACGCGAAGCCCGATGCTAAAGAAGTTTTGGAGGGTCTTTTTATACCAAAACTCAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCTCACAACCTCTTTCTCCACTCGGCATTGGTGCTCTCTAGAAAAATACCGCGATCAGTTCATGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCTTTCCTCATAAATGTTTCTGTTATCTCCGTGAGTGGCGCAGTTTGTAATTCCTCGAATTTGAATGCAGAAGATCAAGAGAGCTGTCAGGATTTGGACTTGAACAAAGCCTCCTTTCTACTAAAAAATGTACTCGGTAAATGGAGTTCAAAACTATTCGCAATTGCTTTGCTTGCTTCGGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGACTTGCGACTGAAACCGTGGATTCGAAATTTTTTGACTCGTTGTTTAGCCATAGTCCCTAGTTTAATTGTTGCCATCATCGGTGGCTCTTCCGGGGCAGGGAAGCTCATCATTATTGCATCGATGATTTTATCATTTGAGCTTCCTTTTGCTTTGATCCCGCTTCTCAAGTTCACTAGCAGCAAAACCAAGATGGGCGCTCACGCCAACTCTTTCACGATATCGGTATTGACATGGATCATCGGTTCGCTGATAATGGCGATAAATGTATACTACTTACTGACGGGCTTCGTAAAGTTGCTTCTTCATAGTGACTTGGAAATTGTGGGTAAGGTGTTTGTTGGGATATTAGGGTTTTCAGCCATAGCGGTATATTTGGCCGGGATCGCTTATCTGGTGTTTCGCAAGAACAAGAAGGAAACACGCCTTCTGGCACTAACAACGCCTGAAAATGGGCAAATGGGAAATGAACAAGGCAATGGATCAATGTATAGTCTCCCAAGAGAAGACATAGTTAGCATGCAATTGCCTCAGAGAAGCTACGTAGCTGATCTCTGA 1632 0.4308 MAVTGSASRQPQFIMSTGNRSSSDAPLIENSDTDQIVIPDKTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSMAANLGVVTGKHLAEHCRTEYPRSTNFVLWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFVELGYAKPDAKEVLEGLFIPKLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQESCQDLDLNKASFLLKNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNFLTRCLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGAHANSFTISVLTWIIGSLIMAINVYYLLTGFVKLLLHSDLEIVGKVFVGILGFSAIAVYLAGIAYLVFRKNKKETRLLALTTPENGQMGNEQGNGSMYSLPREDIVSMQLPQRSYVADL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0725 543 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 23 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele42g0725 543 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0725 Lele-ChrLele42 20300915 20304960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0725 16 543 Inorganic Solute Cotransporters AT1G15960 78.908 0.0 862
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0725 42 20300915 20304960 Lele37g0570 37 4713039 4716371 CCT
Lele42g0725 42 20300915 20304960 Lele38g0538 38 4499518 4503249 CCT
Lele42g0725 42 20300915 20304960 Lele39g0860 39 17530610 17533574 CCT
Lele42g0725 42 20300915 20304960 Lele43g0661 43 5900654 5903313 hybridization
Lele42g0725 42 20300915 20304960 Lele44g0617 44 4841255 4845205 hybridization