Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0685 ATGGAGCCATCTATCTCTCGTAGCGCTAATTCCTCCACCAATGGCCTCCTCTCCGTCAACATCCCCAGCCACAGCGATGTCGAGGCCCTCCCTCCTCGGATCAACGACGACGACGACGAAGTTATCGATCCTGATGATCCTTTTGACGTCACTCACACCAAGAATGCGCCGGCTGAGACACTCCAGCGATGGAGAGAAGCGACTCTAGTTCTCAATGCTTCCCGGCGATTTAGATATACTCTGGACTTGAAAAAGGGAGATGAGGAAGAGCAAAAGAAAGGGTTGATAAGAGCCCATGCCCAAGTCGTACGAGCAGCGCTGCTTTTCAGATTAGCTGGTGAACGTGATCTAGCGGTAGGCACAGGAGTGTCAGCCCAAACCTCAGGTGATAACTTCGGAGTTGGGCTCGAACAACTTGTTTCAATGTCCAAGGATCAGAACATTTCTGCTTTGCAAGAATGCGGAGGGGTTAAAGGTTTATCAGATTTACTAAAATCAGATCTTGAGAAAGGAATCAATGGAGATGACGATGATATGTCAAAAAGGAGAGTGACATTTGGAACGAATACATACCCCAAGAAAAAGGGGCGGAGTTTCTGGAATTTTCTATGGGATGCTTGGCAAGATCTGACCCTTATCATATTGATTATAGCAGCCGTGGTGTCATTGGCACTTGGAATAAAAACAGAGGGCTTGGAAGAAGGATGGTATGATGGAGGAAGCATTGCCTTTGCTGTTTTTCTTGTCATCATAGTAACAGCTACCAGTGATTATCGCCAATCTCTGCAGTTTCAGAATTTGAATTCAGAAAAAGAAAATATACAATTGGAGGTCATTAGAGGCAGTAGAGCAACAAAGATATCAATATTTGACGTCGTTGTTGGTGATCTTGTACCTCTTAAAATAGGAGACCAGGTTCCTGCTGATGGAGTTATAATCACGGCTCACTCACTTGCCATTGATGAATCCAGCATGACCGGTGAAAGCAAGATTATTCACAAAGACCACAAATCACCTTTTTTGATGTCTGGCTGCAAAGTAGCAGATGGCGTTGGTGTTATGCTGGTAACTGGGGTTGGTATCAATACGGAGTGGGGATTGTTGATGGCAAGCATCTCTGAAGATACTGGAGAAGAGACTCCGTTGCAGGTTCCACCTGATCCATCCAAAACAAAGAAAGAAAAGGCTGTTGTACGTTTGAATGGAGTTGCAACTTTTATCGGCATGATAGGTCTTACAGTAGCTGTTGTTGTGCTAGTGGTCCTATTGGCCAGATACTTTACTGGAAACAAGAAAGATGTAGATGGAAATGTCCAATTTGTTGCTGGCCAGACGAGTATCAGTAGTGCAATAGATGGGGTTGTCAAAGTTTTTACTATTGCAGTCACAATTGTGGTTGTTGCAGTTCCTGAAGGTCTTCCTCTGGCTGTTACCTTGACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAGGCCTTGGTGCGAAGGCTTTCGGCCTGTGAAACTATGGGCTGTGCAACAACAATTTGCAGTGATAAAACAGGAACGTTAACCTTGAATCAGATGACTGTGGTTGAGGCATGCGTTGGGAGGAAGAAACTGAATTCAGCTGATGACTCATCAAAGTTGAATTCAGAAGTTTTATCTCTGATAAAAGAGGGCATTGCACAGAATACAACTGGAACTGTTTTTGTGCCTAAGGATGGCGGAGAGACTGAGGTTTCAGGGTCCCCTACAGAAAAGGCAATCCTTTCTTGGGCAGTCAAGTTGGGAATGGATTTTGATCTTATCAGATCAAATTCAACACTTCTCCATGTATTTCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTCTTGCTGAAGCAAAATGTGGACTCCACAGTACATATACATTGGAAAGGCGCTGCAGAGATAGTACTAGGAAAATGCACTCAATATCTTGATTCAAATGGTAGCTTGCTTTCTATTGAAGAAGAGAAGGACTTTTTCAAGGAAGCTATTGAAGACATGGCTGCTCGCAGTTTACGGTGTGTTGCCATTGCATACAGGTCATATGAATTGGACAAAGTTCCCTCTAATGAGGAGGATTTGGCCCAGTGGTCCTTACCTGAGGATGAGCTTGTTTTGCTTGCTATAGTTGGTATAAAGGATCCCTGTCGCCCTGGTGTCAAAGATGCGGTGACAGTATGCACTGCAGCTGGTGTTAAGGTGCGCATGGTTACGGGAGACAATCTTCAAACGGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCACATTTAGATGCTGTTGAACCAGTTATCATTGAAGGAAAGACATTCCGGGCGTTATCTGAACAAGAAAGGGAACAAGTTGCTAAACAAATAACAGTGATGGGGAGGTCTTCTCCAAATGACAAGCTTTTACTTGTTCAAGCACTGCGTAAAGGAGGTGAAGTTGTTGCTGTTACTGGAGATGGCACCAATGATGCTCCCGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATTTCTGGAACTGAAGTCGCAAAAGAAAGTTCAGATATTATAATCCTGGATGATAACTTTGCTTCGGTTGTAAAGGTAGTCCGCTGGGGACGTTCTGTATCTGCAAATATTCAGAAATTTATACAGTTCCAGCTCACAGTTAATGTAGCAGCTCTTGCGATAAATGTTGTGGCGGCAGTTTCTTCGGGTGATGTTCCTTTAAATGCAGTGCAGCTTTTGTGGCTTAACCTTATCATGGACACACTGGGGGCCCTAGCACTAGCTACGGAACCGCCTACTGACCACCTTATGCACAGACCACCAGTTGGTCGAAGGGAACCTCTCATAACGAATAACATGTGGAGGAACTTGCTTGTCCAGGCTGTATATCAAATTGCGGTTCTCCTTGTTCTTAATTTTGGCGGAGAAAGTATTCTCCATGGTGACTCTGAAGCCGAAACCTTGCAACTGAAGAATACTTTGATTTTCAATGCATTTGTCCTCTGCCAAATTTTCAATGAGTTCAATGCTCGAAAACCAGATCAAATGAACGTATTCATCGGAGTGACCAAGAACCGTCTCTTTGTGGTCATTGTGGGAATGACCGTTATACTTCAGGTAATCATTATCGAGTTCCTTGGAAAGTTCACTAGCACGGTGAGGCTTGATTGGCAGATGTGGCTCGTTTCTATTATCATTGGTCTCGTCAGTTGGCCTCTTGCTGTGCTTGGAAAGTTCATTCCCGTTCCAAAAACACCATTGTCTCGCACCTTCAAGAGGATGCTCATGCGATTAAAGAGATCAAAAACTCCTGCTCCTAATTAA 3321 0.4429 MEPSISRSANSSTNGLLSVNIPSHSDVEALPPRINDDDDEVIDPDDPFDVTHTKNAPAETLQRWREATLVLNASRRFRYTLDLKKGDEEEQKKGLIRAHAQVVRAALLFRLAGERDLAVGTGVSAQTSGDNFGVGLEQLVSMSKDQNISALQECGGVKGLSDLLKSDLEKGINGDDDDMSKRRVTFGTNTYPKKKGRSFWNFLWDAWQDLTLIILIIAAVVSLALGIKTEGLEEGWYDGGSIAFAVFLVIIVTATSDYRQSLQFQNLNSEKENIQLEVIRGSRATKISIFDVVVGDLVPLKIGDQVPADGVIITAHSLAIDESSMTGESKIIHKDHKSPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVPPDPSKTKKEKAVVRLNGVATFIGMIGLTVAVVVLVVLLARYFTGNKKDVDGNVQFVAGQTSISSAIDGVVKVFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGCATTICSDKTGTLTLNQMTVVEACVGRKKLNSADDSSKLNSEVLSLIKEGIAQNTTGTVFVPKDGGETEVSGSPTEKAILSWAVKLGMDFDLIRSNSTLLHVFPFNSEKKRGGVLLKQNVDSTVHIHWKGAAEIVLGKCTQYLDSNGSLLSIEEEKDFFKEAIEDMAARSLRCVAIAYRSYELDKVPSNEEDLAQWSLPEDELVLLAIVGIKDPCRPGVKDAVTVCTAAGVKVRMVTGDNLQTAKAIALECGILASHLDAVEPVIIEGKTFRALSEQEREQVAKQITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVSANIQKFIQFQLTVNVAALAINVVAAVSSGDVPLNAVQLLWLNLIMDTLGALALATEPPTDHLMHRPPVGRREPLITNNMWRNLLVQAVYQIAVLLVLNFGGESILHGDSEAETLQLKNTLIFNAFVLCQIFNEFNARKPDQMNVFIGVTKNRLFVVIVGMTVILQVIIIEFLGKFTSTVRLDWQMWLVSIIIGLVSWPLAVLGKFIPVPKTPLSRTFKRMLMRLKRSKTPAPN 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0685 1106 Gene3D - 205 1073 - -
Lele42g0685 1106 FunFam Calcium-transporting ATPase 56 112 - -
Lele42g0685 1106 SFLD Haloacid Dehalogenase 493 871 - -
Lele42g0685 1106 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 1081 IPR023298 -
Lele42g0685 1106 Pfam E1-E2 ATPase 275 489 - -
Lele42g0685 1106 Pfam Ca2+-ATPase N terminal autoinhibitory domain 45 85 IPR024750 GO:0005516
Lele42g0685 1106 FunFam Calcium-transporting ATPase 836 1083 - -
Lele42g0685 1106 SFLD p-type atpase 493 871 IPR044492 -
Lele42g0685 1106 SMART Cation_ATPase_N_a_2 156 227 IPR004014 -
Lele42g0685 1106 Gene3D - 58 110 - -
Lele42g0685 1106 SUPERFAMILY HAD-like 509 924 IPR036412 -
Lele42g0685 1106 Pfam haloacid dehalogenase-like hydrolase 508 833 - -
Lele42g0685 1106 SUPERFAMILY Calcium ATPase, transduction domain A 276 370 IPR008250 -
Lele42g0685 1106 Gene3D - 521 719 IPR023299 GO:0000166
Lele42g0685 1106 Gene3D - 508 864 IPR023214 -
Lele42g0685 1106 FunFam Calcium-transporting ATPase 521 719 - -
Lele42g0685 1106 ProSitePatterns E1-E2 ATPases phosphorylation site. 513 519 IPR018303 -
Lele42g0685 1106 FunFam Calcium-transporting ATPase 254 373 - -
Lele42g0685 1106 PANTHER CATION TRANSPORTING ATPASE 124 1081 - -
Lele42g0685 1106 Pfam Cation transporter/ATPase, N-terminus 156 222 IPR004014 -
Lele42g0685 1106 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 131 1081 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lele42g0685 1106 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 518 716 IPR023299 GO:0000166
Lele42g0685 1106 FunFam Calcium-transporting ATPase 712 864 - -
Lele42g0685 1106 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 447 541 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g0685 1106 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 785 899 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele42g0685 1106 MobiDBLite consensus disorder prediction 1 21 - -
Lele42g0685 1106 Pfam Cation transporting ATPase, C-terminus 904 1078 IPR006068 -
Lele42g0685 1106 CDD P-type_ATPase_Ca_PMCA-like 180 952 - -
Lele42g0685 1106 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Lele42g0685 1106 PRINTS P-type cation-transporting ATPase superfamily signature 712 723 - -
Lele42g0685 1106 PRINTS P-type cation-transporting ATPase superfamily signature 734 744 - -
Lele42g0685 1106 PRINTS P-type cation-transporting ATPase superfamily signature 819 838 - -
Lele42g0685 1106 PRINTS P-type cation-transporting ATPase superfamily signature 843 855 - -
Lele42g0685 1106 PRINTS P-type cation-transporting ATPase superfamily signature 511 525 - -
Lele42g0685 1106 MobiDBLite consensus disorder prediction 1 41 - -
Lele42g0685 1106 FunFam Calcium-transporting ATPase 205 262 - -
Lele42g0685 1106 Gene3D - 176 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0685 Lele-ChrLele42 19906601 19924192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0685 9 1101 Primary Pumps ATPases AT3G21180 73.430 0.0 1605