Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0683 ATGGATGGTATTCATGGGAGTGATTCTCGGATGCAAATGGGTGGTGCACAACATCCAATGCATGTAACCTATGTGCCAGAAAATGAACAACATGGATTGGACCACATGAGTGATGGGAATCAGATGGAAGACAATAACAAATGTGGTGATGCTAATGTAAGAAGACATGAGAGTGTAGAAGGAGAAGTTTCCAACCCTGGAAATGTTACCGACGATCATGGTGCAATAATTGAACAAGCTAGTGGTGACCAGCTCACATTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCGGAAAAGGTTCAAGCTGTGCTATTACTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATCCAATTAATGTTCACCATAATAATCTGGATATGTCTGGGACTCCTGTAAAACTCAGTGTCCCTCAAAGATTAGCTTCATTGATTAGATTTCGAGAAAAGCGGAAAGAACGAAATTTTGAAAAGAAAATACGTTACACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACGTCTTCCAAGTCGAACCCTGATGAATCTGCTCCAGCTGCAACAAATTTGGGCACAAATGAAAACTGGACATCAGACAATATTGGATCCCAACAGCAGGATGTTGTCTGTAGGCACTGTGGCATCAGCGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTAACTGGACACAATTCTTCATTAAATAGGAATGAGAATAAAAGTTTAGGCCAGGCAGTGGAGATTTTGATTAACTTTGGGTTGATGAACTGGTCTAATGCCCTCCATGATGTTGTAATGTGCTTAAATGGAACAACTTTGTGTAATCTCTTTCTGCAAAAGGACTAG 963 0.4174 MDGIHGSDSRMQMGGAQHPMHVTYVPENEQHGLDHMSDGNQMEDNNKCGDANVRRHESVEGEVSNPGNVTDDHGAIIEQASGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANPINVHHNNLDMSGTPVKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESAPAATNLGTNENWTSDNIGSQQQDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLTGHNSSLNRNENKSLGQAVEILINFGLMNWSNALHDVVMCLNGTTLCNLFLQKD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0683 320 Pfam GATA zinc finger 221 257 IPR000679 GO:0006355|GO:0043565
Lele42g0683 320 Pfam CCT motif 145 187 IPR010402 GO:0005515
Lele42g0683 320 ProSiteProfiles CCT domain profile. 145 187 IPR010402 GO:0005515
Lele42g0683 320 SMART GATA_3 215 268 IPR000679 GO:0006355|GO:0043565
Lele42g0683 320 ProSitePatterns GATA-type zinc finger domain. 221 248 IPR000679 GO:0006355|GO:0043565
Lele42g0683 320 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lele42g0683 320 MobiDBLite consensus disorder prediction 180 209 - -
Lele42g0683 320 PANTHER GATA TRANSCRIPTION FACTOR 28 26 275 IPR045280 GO:0006355
Lele42g0683 320 Gene3D - 212 280 IPR013088 GO:0006355|GO:0008270
Lele42g0683 320 CDD ZnF_GATA 220 263 IPR000679 GO:0006355|GO:0043565
Lele42g0683 320 Pfam tify domain 81 112 IPR010399 -
Lele42g0683 320 ProSiteProfiles GATA-type zinc finger domain profile. 215 263 IPR000679 GO:0006355|GO:0043565
Lele42g0683 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 270 - -
Lele42g0683 320 SMART tify_2 78 113 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0683 Lele-ChrLele42 19887539 19891429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0683 1 289 Tify Gene Family AT1G51600 58.923 1.32e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele42g0683 CCT 1.5e-14 CL0281