Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0679 ATGCAATTAGCATCAAATGGTAACAAGGAAGAATGTTCAGAGAGTGAACCCATCTTGAATCAGCATCACGATTTGGAAGAATCTGGAGAACCTCCATTTTCATGTGAAATTACAGATGCTGGAGGGGATTTGACTGTTGATGATTTACAGAATATTCAAGTTGATGAAGCATGTCATCTGATAAATGGAGATCAGCCACAATGTCGGATATGCCTTGAAAGTGAAGGAGAAGATATAATTGCTCCATGCCATTGCAAGGGTACTCAAAAGTATATCCACAGATCATGTCTTGATAATTGGAGGTCTACTAAGGAAGGCTTTGCTTTTTCACACTGTACAGAATGCCGAGCTGTCTTCATATTGCGTGCTAATGTCCCAAATGATCGGTGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCTAGGGATCATGCGTTTATTTTTATAACTGTTCAGCTGGTTGTTGCATTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAGTTGAGAGAAATGTTCGGTTATGAAGAGCATCCATATGGATTCTATACTATGGCTGTTCTAGCAATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCCATTATATGCGGTCAAAGAATCAATGAACGCCATTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAACGTACCAGAACTTGATCCAAGTCATGTGACGGAACTAAGAATGTTGGGCCTTTACTAA 768 0.3945 MQLASNGNKEECSESEPILNQHHDLEESGEPPFSCEITDAGGDLTVDDLQNIQVDEACHLINGDQPQCRICLESEGEDIIAPCHCKGTQKYIHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPNDRWWLRLKFQFLVARDHAFIFITVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0679 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 120 IPR013083 -
Lele42g0679 255 Pfam RING-variant domain 68 115 IPR011016 GO:0008270
Lele42g0679 255 SMART ringv_2 67 116 IPR011016 GO:0008270
Lele42g0679 255 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 188 255 - -
Lele42g0679 255 SUPERFAMILY RING/U-box 64 119 - -
Lele42g0679 255 CDD RING_CH-C4HC3_MARCH 68 116 - -
Lele42g0679 255 ProSiteProfiles Zinc finger RING-CH-type profile. 60 122 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0679 Lele-ChrLele42 19828712 19836826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0679 30 214 C3H Transcription Factor Family AT1G50440 65.445 6.44e-86 254