Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0663 ATGGACTCGCTCAGCTCCGTCTTGTCTTCTCCCAATTCTTCTTCGAGTGATTCTCCTTCGAATTCCAACCTTCCCAGCTCTTCGAACAGGGAAGGCGTGCCTGCTGCGCCCTCAATTTCCAATGAACGAGTCGCTTACAAGCTCAAAGGGTACTTCGATTTGGCCAAGGAAGAGATTGGCAAGGCTGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTGTTCTTCATTATAACAACGCCCAGCGGATTTTGATCGAAGCCAGTTCAACTGCTGTGCCTTCCTATATTACTTCCAGGTTTTCAAGTATTCCTTCGTTTACTTCCAGTGAACGAGAGAAGGTGAATTCTTATCGTGAAAAAATATCGAAATGGCAGGGTCAAGTTTCTGAAAGGTTACAGATTCTAAGTAGACGAGCAGGCAGCAAGTCTACTATTCAGAAAACTGCAACTCAGGGACAAACTGCTGCAGTTTCATTTAAGCCATCAAATGCTAGAAAAGGTGTGTTGCAAAAGAATCATCAAAGAACAAACCATATGGATAAAGATGCAAGCCCAAAATCTAGTCAGATATCTGGTGGAAATTATGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGCCCTTCTGTTGGATGGGAAGATATTGCGGGTCTTGAGAAGGCAAAGCAAGCATTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGATCTCTTCACTGGTCTTCGAAGGCCTGCTAGAGGTTTGCTTCTCTTTGGTCCCCCAGGTAATGGAAAAACCATGCTTGCCAAAGCAGTAGCTTCTGAATCAGCAGGAACATTTTTTAACGTATCCGCAGCGTCCTTGACATCGAAATGGGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAACCATCAGTGATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTAATCGTTATTGGAGCTACAAATAAGCCCCAAGAATTGGATGATGCAGTTCTTCGGAGACTGGTAAAGAGAATATACGTACCTTTGCCGGAGGCTAATGTTCGGAGACTTCTACTAAAGCACAAACTCAAGGGTCAAGCGTTCTCATTACCTAGTGGAGATCTAGAAAGGCTTGTAAAAGATACAGAAGGATATTCCGGGAGTGATCTGCAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGCTGGGTTCTGGCATCCTAACTGTTAAGTCAAATCAGGTAAGAGGACTGAGATATGAAGATTTTAAGAAGGCAATGAGTGTAATTAGACCCAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGGTGGAACGAGGAGTTTGGCTCTAACTGA 1470 0.4313 MDSLSSVLSSPNSSSSDSPSNSNLPSSSNREGVPAAPSISNERVAYKLKGYFDLAKEEIGKAVRAEEWGLIDDAVLHYNNAQRILIEASSTAVPSYITSRFSSIPSFTSSEREKVNSYREKISKWQGQVSERLQILSRRAGSKSTIQKTATQGQTAAVSFKPSNARKGVLQKNHQRTNHMDKDASPKSSQISGGNYDAKLVETINTAIVDRSPSVGWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPEANVRRLLLKHKLKGQAFSLPSGDLERLVKDTEGYSGSDLQALCEEAAMMPIRELGSGILTVKSNQVRGLRYEDFKKAMSVIRPSLNKSKWEELERWNEEFGSN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0663 489 FunFam AAA-type ATPase family protein 385 467 - -
Lele42g0663 489 MobiDBLite consensus disorder prediction 1 35 - -
Lele42g0663 489 PANTHER AAA DOMAIN-CONTAINING 113 488 - -
Lele42g0663 489 Gene3D - 385 467 - -
Lele42g0663 489 FunFam AAA-type ATPase family protein 41 140 - -
Lele42g0663 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 486 IPR027417 -
Lele42g0663 489 SMART AAA_5 250 386 IPR003593 -
Lele42g0663 489 CDD AAA 239 384 - -
Lele42g0663 489 Pfam AAA+ lid domain 409 440 IPR041569 -
Lele42g0663 489 Pfam Vps4 C terminal oligomerisation domain 455 487 IPR015415 -
Lele42g0663 489 SMART smart 48 135 IPR007330 -
Lele42g0663 489 Gene3D - 213 483 IPR027417 -
Lele42g0663 489 MobiDBLite consensus disorder prediction 1 36 - -
Lele42g0663 489 CDD MIT_spastin 48 136 - -
Lele42g0663 489 FunFam Spastin, putative 213 397 - -
Lele42g0663 489 Pfam ATPase family associated with various cellular activities (AAA) 254 384 IPR003959 GO:0005524|GO:0016887
Lele42g0663 489 ProSitePatterns AAA-protein family signature. 356 375 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0663 Lele-ChrLele42 19602406 19610429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0663 213 470 Calmodulin-binding Proteins AT3G56690 39.700 1.63e-46 171