Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele42g0654 | ATGGATCCAGTAGCTGCACAAGGTCGTCCTCTTCCACCACCTTTTCTCACCAGAGATCTTCATCTTCATCCCCATCATCAATTTCAGAGCCACCATAATAACAATCACTCCGCCGCCGCCGACGATGAGCAGGCTGGTAATGGTAGTTTGAACCGCGGGCATAAGCGAGATCACGAGAATACCGTCTCTGAGGGGAAGGAATTGGGTTCTAACACAGGTTTTGCCGGAGACGCTGCTGGAGGTAGCGGTGGGGATAATAGTGCTAGAAGGCCTCGTGGAAGACCCGCCGGTTCGAAGAACAAGCCTAAGCCTCCAATCATCATAACGAGGGATAGCGCCAACGCTCTTAGGTCCCACGTCATGGAGATCGCAAATGGCGGAGACATCATGGAGAGTGTCACCACCTTCGCGCGGCGGAGGCAGCGTGGGGTTTGCATTCTCAGTGGGAGTGGCACCGTCATGAATGTCACCCTCCGGCAGCCCGCTTCACCCGGTGCAGTTGTCACCTTACATGGGAGATTCGAGATTCTATCACTGTCCGGCTCCTTCCTGCCTCCGCCAGCACCACCTGCAGCATCAGGGCTAGCCATATATCTCTCCGGCGGACAGGGTCAAGTCGTCGGAGGTACCGTGGTGGGGCCGTTGTTGGCGTCAGGGCCAGTGGTCATTATGGCTGCTTCGTTCGGAAATGCGGCGTACGAGAGGCTGCCGTTAGAGGAGGAGGAGACTCCAGTGCCGGTGACCGGAAGCGGAGGTTTAGGGTCGCCGGGAGAAATCGTGGGACAACAGCAACAAATCGTCGGAGATCCTAACACACCACCATCAATGTTTCATGGAGTTCCTCAGAATCTTCTGAATTCTTGCCAATTACCAGCTGAAGGATTTTGGGGTGGAGGCAGTGCTGTTCGTCCTCCATTCTAA | 921 | 0.5537 | MDPVAAQGRPLPPPFLTRDLHLHPHHQFQSHHNNNHSAAADDEQAGNGSLNRGHKRDHENTVSEGKELGSNTGFAGDAAGGSGGDNSARRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGGDIMESVTTFARRRQRGVCILSGSGTVMNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLSGGQGQVVGGTVVGPLLASGPVVIMAASFGNAAYERLPLEEEETPVPVTGSGGLGSPGEIVGQQQQIVGDPNTPPSMFHGVPQNLLNSCQLPAEGFWGGGSAVRPPF | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele42g0654 | 306 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 117 | 229 | IPR005175 | - | |
| Lele42g0654 | 306 | ProSiteProfiles | PPC domain profile profile. | 113 | 251 | IPR005175 | - | |
| Lele42g0654 | 306 | Gene3D | - | 116 | 245 | - | - | |
| Lele42g0654 | 306 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 113 | 247 | - | - | |
| Lele42g0654 | 306 | CDD | DUF296 | 117 | 184 | IPR005175 | - | |
| Lele42g0654 | 306 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 37 | 284 | IPR014476 | GO:0003680 | |
| Lele42g0654 | 306 | FunFam | AT-hook motif nuclear-localized protein | 116 | 243 | - | - | |
| Lele42g0654 | 306 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
| Lele42g0654 | 306 | PIRSF | ESCAROLA | 16 | 306 | IPR014476 | GO:0003680 | |
| Lele42g0654 | 306 | MobiDBLite | consensus disorder prediction | 48 | 64 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele42g0654 | Lele-ChrLele42 | 19536997 | 19537917 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele42g0654 | 1 | 297 | AT-hook Motif Nuclear Localized (AHL) Family | AT2G45430 | 60.252 | 6.11e-84 | 254 |