LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g0639	ATGGTCGCCGCCTCCTCCTCCTCCGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCGCAGCTTCCTCCGTCTTCTGTCGCCGTGAAATGGAGCTGCTTCAGATGGCTCACACCAAAGTCCTTGAAGCTAGGACTTGGGTTGAGAGTCATCAGAAGAATAGTGGCGTTACAAGCTCAATGCTTTCCTCGTCGTCGCTGTTATCATTGGCTGAGGTAGGGGTGGCGCTCGGAGACTGTGATAAGCTGTATGAAGAGAGTGAGCAAAGGCTGAATCAATTGGTATCATCAAAGCCTGGTTATGATTGGGATGAAGAAGATGAAGTAACGTGGGTGAGTGGTGTAATGAGTAACCATAGGACGTGTTTGGATGGGTTGGAAGAGAAAGGGTACGCGGAAGCTCAGGGATTGCATAAGAACTTGTCTTTATTACTTGGAGAGGCTCTTCACTTATATGCTAAGAACAAGCACAGAGCAAAACCAAAAGCAAAAGCTAGAAGAACACCCCGAAAGGGAAACATATCCAAATCATACGGTGGACAATTGGCGTCATGGAACCCGAGACAGTCAAATGCACATTTCACGGTGGCTCAAGATGGTTCCGGCAGCCACAGAACCATCGGAGCCGCCATAGAAGCAGTGAGTTCAATGGGACACAATCGTCCCGAAAGAGTCATCATCCACGTCAGATCAGGAGTATACAACGAGAAGGTCGAGATCGGATACAAGCTCAAGAACCTGATGCTCGTCGGAGACGGCATCGACAAAACCATCATCACCGGCGCCAGAAGTGTCGGCCGTGGTTCCTCCACCGTCAGCTCCGCCACATTCGATGTATCAGGCGATGGATTCTGGGGAAGGGACATGACGATCGAGAACAGAGCAGGTCCACAGGATCACCAAGCGGTGGCGATGAAGGTGAGCTCAGACCTCTCCGTCTTCTACAGATGCAGCTTCAGAGGCTACCAAGACACACTCTACGTCCACTCCAATCGTCAGTTCTACAGAGACTCCATAATTTCCGGCACCGTGGACTTCATATTCGGCGACGCCTCCGCCGTCTTCCAGAACTGCGAAATCCTCCTCCGGAAGCCAATGTCTCGCCAATCCACCTTCATCACCGCACAGGGACGCTCCGACCCGAACCAACCCACCGGAATAGTGATCCAAAACTGTAAAATTAGGCAGGCATCAGGCTCCGCCGGAACAAAAAACTACTTGGGAAGGCCATGGAAGAAGTACTCGAGGACGGTGTTCATGAAGAATGATCTTGATGGTTGTATTGATCCAAAAGGGTGGAGTGAGTGGAGTGGTGGTTTTGCATTATCGACTCTATATTATGCAGAGTATATGAACAATGGTGCTGGTTCTTCTACTCAAAATAGAGTGAAATGGCCTGGATTTCATGTTCTGCGTTCTACTTCTGAAGTTAGACCTTTCTCTGTCGACGAGTTTCTGGGCGGAGGTCGGTGGATTCCGGCCACCGGTGTGCCCTTCTCCGCCGGTGTTTGA	1506	0.5093	MVAASSSSAVLLLLLLLLAASSVFCRREMELLQMAHTKVLEARTWVESHQKNSGVTSSMLSSSSLLSLAEVGVALGDCDKLYEESEQRLNQLVSSKPGYDWDEEDEVTWVSGVMSNHRTCLDGLEEKGYAEAQGLHKNLSLLLGEALHLYAKNKHRAKPKAKARRTPRKGNISKSYGGQLASWNPRQSNAHFTVAQDGSGSHRTIGAAIEAVSSMGHNRPERVIIHVRSGVYNEKVEIGYKLKNLMLVGDGIDKTIITGARSVGRGSSTVSSATFDVSGDGFWGRDMTIENRAGPQDHQAVAMKVSSDLSVFYRCSFRGYQDTLYVHSNRQFYRDSIISGTVDFIFGDASAVFQNCEILLRKPMSRQSTFITAQGRSDPNQPTGIVIQNCKIRQASGSAGTKNYLGRPWKKYSRTVFMKNDLDGCIDPKGWSEWSGGFALSTLYYAEYMNNGAGSSTQNRVKWPGFHVLRSTSEVRPFSVDEFLGGGRWIPATGVPFSAGV	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g0639	501	FunFam	Pectinesterase	185	501	-	-
	Lele42g0639	501	Pfam	Plant invertase/pectin methylesterase inhibitor	51	132	IPR006501	GO:0004857
	Lele42g0639	501	Gene3D	-	186	501	IPR012334	-
	Lele42g0639	501	Gene3D	Invertase/pectin methylesterase inhibitor family protein	33	151	IPR035513	-
	Lele42g0639	501	ProSitePatterns	Pectinesterase signature 2.	338	347	IPR033131	-
	Lele42g0639	501	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	72	130	IPR035513	-
	Lele42g0639	501	CDD	PMEI-like_4	73	153	-	-
	Lele42g0639	501	MobiDBLite	consensus disorder prediction	154	180	-	-
	Lele42g0639	501	Pfam	Pectinesterase	192	486	IPR000070	GO:0030599\|GO:0042545
	Lele42g0639	501	PANTHER	PECTINESTERASE	38	491	-	-
	Lele42g0639	501	SUPERFAMILY	Pectin lyase-like	188	500	IPR011050	-
	Lele42g0639	501	MobiDBLite	consensus disorder prediction	154	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g0639	Lele-ChrLele42	19354154	19358790	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g0639	11	501	Carbohydrate Esterase	AT3G60730	50.962	0.0	525