Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0628 ATGGCTCTCACTTTCCCACTTGTTTACTTGCTCTCTCTCTCAGTTTTCTTCTCCATTTTTCAGTTCACGCCTTCTTCTTGCTTCATCCCCAGAAAGTTCCTTAATTCATCTTTTTCATACACCCCTTCTGGTTCAGACTGGTCTCCGGCCGAGGCCACTTGGTACGGTAGCCCTAACGGCGCCGGAAGTGATGGGGGTGCGTGTGGATATACTAGTGCTGTGGAGCAACCTCCATTTTCTTCGATGATATCAGCGGGAGGTCCTACTCTGTATGAATCAGGGAAAGGCTGTGGAGCTTGTTATGAGGTGAAGTGCACTGAGAACTCCGCGTGCTCCGGCAAGCCGGTGGAGGTAGTGATCACCGATGAATGCCCCGGCTGCGGCTCCGCCGACAAAGTTCACTTTGACTTGAGCGGCACGGCCTTCGGCGCCATGGCTGTTTCAGGTCAGGCTCAGAAGCTACGCGATGCTGGCATTTTGCAGATTCAACACAGAAGAGTGAAATGCAACTATCGTGGCACGTCATTAGCATTCCACGTGGACTCAGGCTCGAACGAGAACTACTTCGCATGTTTGATAGAGTACGAGGACGGTGACGGAGACCTAGCCAAGGTGGAACTGAAGCAGGCTCTGGATTCTGCCACGTGGACTCCGATGCAACAGTCATGGGGCGCCGTCTGGAAGCTCAACGCCGGAGCGCCGCTCAAAGCCCCCTTCTCCCTCCGCCTCACCACCGTCGAGTCCGGCCGCACTCTGGTCGCCAATAACATCATCCCCTCCGGTTGGACCCCCGGCCAAACTTACCGATCACCGGTCAACTTTCAGACCTAG 831 0.5487 MALTFPLVYLLSLSVFFSIFQFTPSSCFIPRKFLNSSFSYTPSGSDWSPAEATWYGSPNGAGSDGGACGYTSAVEQPPFSSMISAGGPTLYESGKGCGACYEVKCTENSACSGKPVEVVITDECPGCGSADKVHFDLSGTAFGAMAVSGQAQKLRDAGILQIQHRRVKCNYRGTSLAFHVDSGSNENYFACLIEYEDGDGDLAKVELKQALDSATWTPMQQSWGAVWKLNAGAPLKAPFSLRLTTVESGRTLVANNIIPSGWTPGQTYRSPVNFQT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0628 276 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Lele42g0628 276 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Lele42g0628 276 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Lele42g0628 276 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Lele42g0628 276 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Lele42g0628 276 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Lele42g0628 276 PANTHER EXPANSIN-B3 30 274 - -
Lele42g0628 276 SUPERFAMILY PHL pollen allergen 175 270 IPR036749 -
Lele42g0628 276 Gene3D - 171 275 IPR036749 -
Lele42g0628 276 SUPERFAMILY Barwin-like endoglucanases 37 173 IPR036908 -
Lele42g0628 276 Pfam Lytic transglycolase 84 163 IPR009009 -
Lele42g0628 276 Gene3D - 32 170 IPR036908 -
Lele42g0628 276 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Lele42g0628 276 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Lele42g0628 276 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Lele42g0628 276 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Lele42g0628 276 PRINTS Major pollen allergen Lol pI signature 225 242 IPR005795 GO:0005576|GO:0019953
Lele42g0628 276 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Lele42g0628 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 270 IPR007117 -
Lele42g0628 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 174 IPR007112 -
Lele42g0628 276 SMART dpbb_1 83 164 IPR007112 -
Lele42g0628 276 Pfam Expansin C-terminal domain 177 259 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0628 Lele-ChrLele42 19232721 19234327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0628 25 274 Expansin Gene Family AT1G65680 62.800 2.78e-117 335