Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0627 ATGGCCCTTATGGTCGGTGATAAACAATCTAATACCTTGAAGCACTTCTGCAAAATCTGCAAGAAAGGATTCGGGTGTGGGAGAGCTTTAGGAGGCCACATGAGGGCGCATGGCCTCGGAGACGACGGTGGCGGGATGGACGATGATGATGACGCGGCCAGCGACTGGGATGGTGGTGGGGATGCTAATGTTCCTCCCTCCAGCCAAAAAAATTATGCGTTGAGGACGAACTCCAATCGGTTAAAGAATTCTATTCGGACTTGTGAGAATTGTGGTACAGTGTTCTGGTCTTGGAAGTCCTTCCTTGAACATGGTAATGGTAAGTGCGGTTCCGATGACACCGCTGACGACTCGTTTGTCTCGTCGGACGGCGACGATATGTCGGGTGGTGGTGGTCGGAGAGGTTGTGGTAATTCGTCTAAGAGGAAGAGGTCTGTTGGAACCAAAGTGGGAAGCTTCAATTATAATAACCCTAATTGCTCAGCATCCAATGAAGACGAAGACCTCGCTAACTGTTTGATGATGCTGTCGAGCGCCACCGTGGAGGCAGATGAATCTTCTGCATTGGCGATGAGCAAAGACGAAGAGAGAAGAAGAAACCCTAATTTGAGCTTCATGGTTCCAACGTCACAAGTCCCTTCATCAGATCATCATAACAAAGCCAAAGAGGTAGGCAGCAACAACAACAATAATAATAAGGGTTTGTTTGAGTGCAAAGCATGCAAGAAAGTGTTCAATTCGCATCAAGCATTGGGTGGTCACAGAGCCAGCCACAAGAAAGTCAAAGGTTGCTTCGCCGCTCGGCTCGACAACCTCGACGACACCGGCGCCGATGACGACGTAATCACCTATGAAGATCAACTCTTCCCAACGAACAAATCCAACACCCTTCACTTCGATCATGGCTCCAACAACAACAATGCCTCATCATCATCCTCTAAAAGGAAATCAAAATTCCACGAATGCTCGATATGTCACCGAGTTTTCTCGTCGGGACAAGCTCTGGGAGGACACAAGAGGTGTCATTGGATTACATCGAACGCACCAGACACTTCGGCGTTGGCTAGGTTTCAGCAATTTCAAGACCAAATAGAACAACACATGAAAAATAACGAAGTTGTTATACCTAATAAGTTGGACTCTGACCCGATTGATCTGAAGCTCGATCTCAACGTCCCGGCTCCATCGCCGGATTCCGGCCTCCGCACCGTAATCTACTTACCGTCATGGGTAGGTGGTGGTGGAGAAAGAGTAGTAAAGGAACATAAAGAAGACAATATTAGTCAAAGCCATCAAATGGACAACGAGAACAACGGCGAAGAATGCAAGAACAACAGCAGCCAAAAAAACCTTAACATTAGCAATGGTTCGACGATGCAAAACGTGGTCGTGGTGGAAGATGACGAAGCTGACAGTAAGGTGAAGTTAGCGAAACTAAGTGAACTAAAAGACATGACAGAAGAAGGGAGTTCTTCGGCATGGTTACAGGTGGGAATCGGTTCTTCGACAACAACTGACGTGGGAACTGACCCATAA 1536 0.4746 MALMVGDKQSNTLKHFCKICKKGFGCGRALGGHMRAHGLGDDGGGMDDDDDAASDWDGGGDANVPPSSQKNYALRTNSNRLKNSIRTCENCGTVFWSWKSFLEHGNGKCGSDDTADDSFVSSDGDDMSGGGGRRGCGNSSKRKRSVGTKVGSFNYNNPNCSASNEDEDLANCLMMLSSATVEADESSALAMSKDEERRRNPNLSFMVPTSQVPSSDHHNKAKEVGSNNNNNNKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDTGADDDVITYEDQLFPTNKSNTLHFDHGSNNNNASSSSSKRKSKFHECSICHRVFSSGQALGGHKRCHWITSNAPDTSALARFQQFQDQIEQHMKNNEVVIPNKLDSDPIDLKLDLNVPAPSPDSGLRTVIYLPSWVGGGGERVVKEHKEDNISQSHQMDNENNGEECKNNSSQKNLNISNGSTMQNVVVVEDDEADSKVKLAKLSELKDMTEEGSSSAWLQVGIGSSTTTDVGTDP 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0627 511 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Lele42g0627 511 MobiDBLite consensus disorder prediction 187 229 - -
Lele42g0627 511 SUPERFAMILY beta-beta-alpha zinc fingers 235 342 IPR036236 -
Lele42g0627 511 MobiDBLite consensus disorder prediction 41 73 - -
Lele42g0627 511 Pfam C2H2-type zinc finger 320 344 - -
Lele42g0627 511 Pfam C2H2-type zinc finger 236 260 - -
Lele42g0627 511 Pfam C2H2-type zinc finger 15 37 - -
Lele42g0627 511 MobiDBLite consensus disorder prediction 295 314 - -
Lele42g0627 511 ProSitePatterns Zinc finger C2H2 type domain signature. 322 342 IPR013087 -
Lele42g0627 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 320 342 IPR013087 -
Lele42g0627 511 MobiDBLite consensus disorder prediction 431 455 - -
Lele42g0627 511 Gene3D Classic Zinc Finger 233 342 - -
Lele42g0627 511 MobiDBLite consensus disorder prediction 427 455 - -
Lele42g0627 511 MobiDBLite consensus disorder prediction 295 313 - -
Lele42g0627 511 SMART c2h2final6 320 342 IPR013087 -
Lele42g0627 511 SMART c2h2final6 236 258 IPR013087 -
Lele42g0627 511 SMART c2h2final6 15 37 IPR013087 -
Lele42g0627 511 MobiDBLite consensus disorder prediction 485 511 - -
Lele42g0627 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Lele42g0627 511 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Lele42g0627 511 MobiDBLite consensus disorder prediction 486 511 - -
Lele42g0627 511 MobiDBLite consensus disorder prediction 120 150 - -
Lele42g0627 511 PANTHER OS02G0659100 PROTEIN 8 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0627 Lele-ChrLele42 19224264 19225799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0627 141 388 C2H2 Transcription Factor Family AT1G02040 35.887 8.93e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele42g0627 zf-C2H2_6 8.5e-12 CL0361