Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0626 ATGGAGAAGCGCGAGTGCAAGCTTTGCTTCAAAACCTTCGCTAATGGCAGAGCTCTGGGAGGTCACATGAGGTCTCACATGATGAAGAAGCAGCTTCCACTACCTTCAAAACCAGAGGAATCTCGATCACCATCTCCTACCTTACTGAGTTTCGAGGCCGACGACTCGCCTTCTTCTTCTTCTTCATCTGAAGATGAAGGATATAACGGTCTGAATCATGTCTTAAGAGAGAATCCGAAGAGAAGCATTCATATCGTAGATCCTGAGTTCTCGTTTGTTGTCGATACTAATGGCTCCGTGATTCAAGACAAAGAAAGCGAGACCGAGACCGAGTCATCGAAGAAGCCAACTCGGAAACGATCCAAACGCGCTTGGAAACTCGGTAGTTTCTATGACGATGACGATGACGATGATCACTACATTCATAAGAAAATTCAGCATCAAGAAACAGTGGAAAAGCTCAAATCGAACGAATTCTGTAAGACCGAGTCGTGGATCACGGAGCCTGAACCGGCGAGTTCGATCTCGGATACGACCACCGAAGAAGACGTCGCCTACTGCCTTATGATGCTTTCAAGAGATAAATGGAAGAGACAAAGCGATCTGAAAGACCAATACGACGTCGTGGAGGAAGACGAGGACGAAGACGAAGACGAAGACGAAGACGCAGACGAAGAAGAAGATGACGATGGCGATGAATCCGAGGGGGATTTCAAACGATTCAAATCCAGAACTCGAGGTAAGTACACGTGTGAGACGTGCAAGAAAGTGTTTCGATCTTATCAAGCACTCGGTGGTCACAGAGCAAGTCACAAGAAGATCAAAGTGATGGAGCTCGAGAATCATAATAATGGAGGGGGCCGCACTTCGCCTTCTTCAGTGTTCAATAAGAAAATTCACGAATGCCCAATCTGTTTCAGAGTGTTCTCTTCGGGTCAAGCTCTTGGGGGACACAAGAGGTCCCATCTTACAGGTTCATCGACATTACCGATCACTCAAGCTTCAACTAAACTGATCGAAAATTTCATAGATCTTAACCTTCCTCCAGCTCCAACGGATGAAGACGAAATCAGCCAAATCGACAATTCTGGAGTTTCAGATGCAGAATTCGTCGTTGGTCATCAGCGCATCATCAGACAGTGA 1143 0.4628 MEKRECKLCFKTFANGRALGGHMRSHMMKKQLPLPSKPEESRSPSPTLLSFEADDSPSSSSSSEDEGYNGLNHVLRENPKRSIHIVDPEFSFVVDTNGSVIQDKESETETESSKKPTRKRSKRAWKLGSFYDDDDDDDHYIHKKIQHQETVEKLKSNEFCKTESWITEPEPASSISDTTTEEDVAYCLMMLSRDKWKRQSDLKDQYDVVEEDEDEDEDEDEDADEEEDDDGDESEGDFKRFKSRTRGKYTCETCKKVFRSYQALGGHRASHKKIKVMELENHNNGGGRTSPSSVFNKKIHECPICFRVFSSGQALGGHKRSHLTGSSTLPITQASTKLIENFIDLNLPPAPTDEDEISQIDNSGVSDAEFVVGHQRIIRQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0626 380 ProSitePatterns Zinc finger C2H2 type domain signature. 302 322 IPR013087 -
Lele42g0626 380 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Lele42g0626 380 MobiDBLite consensus disorder prediction 41 68 - -
Lele42g0626 380 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 373 IPR044303 GO:0006355
Lele42g0626 380 MobiDBLite consensus disorder prediction 202 239 - -
Lele42g0626 380 SMART c2h2final6 300 322 IPR013087 -
Lele42g0626 380 SMART c2h2final6 249 271 IPR013087 -
Lele42g0626 380 SMART c2h2final6 4 26 IPR013087 -
Lele42g0626 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele42g0626 380 Gene3D Classic Zinc Finger 246 322 - -
Lele42g0626 380 MobiDBLite consensus disorder prediction 206 234 - -
Lele42g0626 380 SUPERFAMILY beta-beta-alpha zinc fingers 249 322 IPR036236 -
Lele42g0626 380 MobiDBLite consensus disorder prediction 29 74 - -
Lele42g0626 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 276 IPR013087 -
Lele42g0626 380 MobiDBLite consensus disorder prediction 101 121 - -
Lele42g0626 380 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele42g0626 380 Coils Coil 209 229 - -
Lele42g0626 380 Pfam C2H2-type zinc finger 300 323 - -
Lele42g0626 380 Pfam C2H2-type zinc finger 5 27 - -
Lele42g0626 380 Pfam C2H2-type zinc finger 249 273 - -
Lele42g0626 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 322 IPR013087 -
Lele42g0626 380 MobiDBLite consensus disorder prediction 102 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0626 Lele-ChrLele42 19207786 19208928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0626 1 360 C2H2 Transcription Factor Family AT3G60580 40.437 5.64e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele42g0626 zf-C2H2_6 2.8e-10 CL0361