Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0602 ATGTCAGCCTCATCTTCATCCACTAATTCTTCCTTTTCATCGGACCACCACCTTTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCCATTTCTGTGACACTGTTCTCGCGGTCAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTGTGAGATGCGGTCATTGCACCAACCTTCTGTCTGTGAACATGCGTGGCCTTCTTTTTCCTTCTTCCAATCAGCTTCACCTCGGACACAACTTCTTCCCCCCTCAGAATCTCCTGGAGGAGATTCGAAATGCACCATGTTCAAATATGCAGATGATGAGCCATCAGCAGCTTCCATACCCAAATAATGACTCAGTTATGAGCACCATGCGAGGAGGAGGACTTGAAGAAATCCCTAAACCTCCACCACCAGCTAACAGACCTCCAGAAAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAAGCTGTGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTCCCTCACATACACTTCGGACTTATGCCTGAACGCCAACCCGTGAAGAAAGCTAACGTGCGACAGGAAGGAGAAGACGCGATCATGAAAGAAGGGTTTTTGGGTCCCACAAATGTACGTATATCTCCCTTTTAA 678 0.4794 MSASSSSTNSSFSSDHHLSPSDQLCYVHCHFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLFPSSNQLHLGHNFFPPQNLLEEIRNAPCSNMQMMSHQQLPYPNNDSVMSTMRGGGLEEIPKPPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAVNPDISHREAFSAAAKNWAHFPHIHFGLMPERQPVKKANVRQEGEDAIMKEGFLGPTNVRISPF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0602 225 SUPERFAMILY HMG-box 129 182 IPR036910 -
Lele42g0602 225 MobiDBLite consensus disorder prediction 120 144 - -
Lele42g0602 225 Pfam YABBY protein 20 189 IPR006780 GO:0007275
Lele42g0602 225 Gene3D High mobility group box domain 129 207 IPR036910 -
Lele42g0602 225 PANTHER PROTEIN YABBY 6-RELATED 9 201 IPR006780 GO:0007275
Lele42g0602 225 FunFam Axial regulator YABBY 134 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0602 Lele-ChrLele42 18659550 18663926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0602 31 223 C2C2-YABBY Transcription Factor Family AT4G00180 61.722 2.00e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele42g0602 YABBY 2e-72 CL0114