Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0583 ATGCAAGTGAAGAAGAAGGATCAAGGGCCTGTAAGAAAAGGGCCATGGAAAGCCGTGGAAGACGAAGTGCTTCTAAGCCATGTCAAGAAGTATGGCCCCAGAGATTGGAGCCCCATTCGATCCAAGGGCCTTCTTCAACGCACTGGAAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGTCCAAACTCAAGAAGTTCATTCCTCTTCCCTATATACCTTTTTATTTTGTTGATTTGGCGTTTGATAAAAGTTCTGTTAGTTGCTGGGCTGATGCAGGCTCCTAAGTTGAGTTCTTCATCTGATGAAGAATCTTCATCAGAGGTTCATCAGCCACGCTCATCATTCTTTACTGAGAATAATTCAGAGGTCATAAAGATGATTCCATTACCAGATCTCATGAACTCCAGCCGGTAA 417 0.4388 MQVKKKDQGPVRKGPWKAVEDEVLLSHVKKYGPRDWSPIRSKGLLQRTGKSCRLRWVNKLRPNSRSSFLFPIYLFILLIWRLIKVLLVAGLMQAPKLSSSSDEESSSEVHQPRSSFFTENNSEVIKMIPLPDLMNSSR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0583 138 CDD SANT 15 60 IPR001005 -
Lele42g0583 138 MobiDBLite consensus disorder prediction 97 117 - -
Lele42g0583 138 SMART sant 12 62 IPR001005 -
Lele42g0583 138 Pfam Myb-like DNA-binding domain 16 64 - -
Lele42g0583 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Lele42g0583 138 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Lele42g0583 138 Gene3D - 13 64 - -
Lele42g0583 138 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lele42g0583 138 PANTHER TRANSCRIPTION FACTOR DUO1 4 66 - -
Lele42g0583 138 FunFam MYB transcription factor 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0583 Lele-ChrLele42 18286553 18288931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0583 1 70 MYB Transcription Factor Family AT3G60460 71.429 4.53e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele42g0583 Myb_DNA-bind_6 1.2e-10 CL0123