Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0564 ATGGACTTTGAAGGGAACAACATGTTCTGTTTGAGCAACGCTAATAACAGAGAGCAGAACGGTGGTGGAAATAGTATTAACAGTACCAACTTTTCTTGGGATTTATGGGAACCACCTTCTAACAATTCTACCCTCATAAATACTTTCTACTCCGCCGCCGACACGGCGGAGACCTCGGCGGCTGCGGTCGCCGCCACCACTCGCCACGAGGCTGTCCTCGCAAACGCGCTGATGTTTCTTCCTCCTCCTCAGGCTAGTAGTAGTACTGCAGCTGATCGTGACCCCGACAACGGCGGCGTTGACCTTGGTGGCCAACATCATCATCAACGACGGCAACAGCAGCAGGAGGCGCTGTACTCCGGCGATGGGGCTCACGTGCATCTGGACCCACATCTCATGTGTTTGAAGCTGGGGAAGAGGCATTATTTTGAGGACGCTAATGCTCCTCCTCTTGGCGGCGGCGTAGGAGGAGGCGGAGTCGGCGGTGGGTTTGCTTTAGCAGGAAAGAGAGGGAGAGGAGGCTTCTATGGAGGAGGCAGTGTGAAGACAGCGACGGCGGCAACAACGACGACGACGGTGGCGAGGTGTCAGGTGGAGGGATGCCACGTGGCACTGCTGAACGCGAAGGAGTACCACCGGAGACACAGAGTTTGTGAGATGCATTCCAAGGCACCGAAGGTGGTCGTGTTAGGGTTGGAGCAGAGATTTTGTCAACAGTGTAGCAGGTTTCATGTGGTATCGGAGTTCGATGATTCCAAGAGGAGTTGCCGTAGGAGATTGGCAGGCCACAATGAACGAAGAAGAAAGAGCTTTCACGATTCTGTCTCTAGGAGTTCCTCCTCTCAAGAAAATAAGTTACTGGTTGGAGGGTTTCCATACTTACCATCACCCCTGCCAATATCATCCGGCGGCAGGTGTGCTCTCTCTCTTCTGTCATCATCTAAGAGTGACCACCTGCGTCTTTCTCCATCCGATCTCTCGGCAAGATGCAGCGCCGCCCTACGAGAACTCATAGCCGAGAACCGAGCAGCCGCCATGGCTAAACAAATCATTTTGGAAAGAGACTGGCACTTACACCACCAGCACCATCAAGACGAAGATGACCACGACGACAAGGACCATAATAAGGAGATTCAACTTCAATCCAATTTCAATTTCTCTCAACACCACCACATGTTTCCCTAG 1185 0.5266 MDFEGNNMFCLSNANNREQNGGGNSINSTNFSWDLWEPPSNNSTLINTFYSAADTAETSAAAVAATTRHEAVLANALMFLPPPQASSSTAADRDPDNGGVDLGGQHHHQRRQQQQEALYSGDGAHVHLDPHLMCLKLGKRHYFEDANAPPLGGGVGGGGVGGGFALAGKRGRGGFYGGGSVKTATAATTTTTVARCQVEGCHVALLNAKEYHRRHRVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSFHDSVSRSSSSQENKLLVGGFPYLPSPLPISSGGRCALSLLSSSKSDHLRLSPSDLSARCSAALRELIAENRAAAMAKQIILERDWHLHHQHHQDEDDHDDKDHNKEIQLQSNFNFSQHHHMFP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0564 394 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 93 335 IPR044817 GO:0003677
Lele42g0564 394 MobiDBLite consensus disorder prediction 83 117 - -
Lele42g0564 394 ProSiteProfiles Zinc finger SBP-type profile. 193 270 IPR004333 GO:0003677
Lele42g0564 394 MobiDBLite consensus disorder prediction 99 113 - -
Lele42g0564 394 Gene3D - 187 257 IPR036893 GO:0003677|GO:0005634
Lele42g0564 394 Pfam SBP domain 196 269 IPR004333 GO:0003677
Lele42g0564 394 FunFam Squamosa promoter-binding-like protein 14 187 257 - -
Lele42g0564 394 SUPERFAMILY SBT domain 194 274 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0564 Lele-ChrLele42 17502283 17504614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0564 129 269 SBP-box Gene Family AT5G43270 51.064 6.14e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele42g0564 SBP 1.9e-31 No_clan