Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0563 ATGTTCTCCCTTGACCCACTCCCTCCGGTCAACGCCGGTAACTGTGGGCCTGGTGGTGGGCTTCTTTTAGTGCCCAAGTCTGAGGATGTGGGTCGGTCCATGGACTTCTCGGCGTCTCGAATTGGACTCAACCTCGGCGGCCGAACGTACTTCTCCAGCTCCGAGGACGACTTCGTGAGCCGGCTCTACCGCCGGCCCCGGCCGTTAGAACCAGGCTCGACGATGTCGTTCAACAACTCCTCGCCGAGATGCCAAGCTGAGGGATGCAATGCCGATCTCTCTCACGCGAAGCACTATCACCGCCGACACAAGGTGTGCGAGTTTCACTCCAAGGCTGCCACCGTCATAACCGCCGGGTTGACTCAGCGATTCTGCCAACAATGTAGCAGGTTTCATCTTCTTTCGGAGTTTGATAACGGAAAACGAAGCTGCAGGAAAAGATTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAACAACAACAACAACCACCTCAAGAAACCCAGAAATCTCAATTCGAAAAGCCTCGAAATTCTACTTTGAACAATATTGTAGCAAGGTCCCCGCTGGATTCTGGAATCCAGTCATCGTCAGTGACGGTGGCGGTGTCGCCGCGGGATTATTTCCAGCAAAAGCCACATGAAATCGCAATATCAAGGACACTGTTTTTCTCAAGTGGGTAG 684 0.5278 MFSLDPLPPVNAGNCGPGGGLLLVPKSEDVGRSMDFSASRIGLNLGGRTYFSSSEDDFVSRLYRRPRPLEPGSTMSFNNSSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVITAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQQQQPPQETQKSQFEKPRNSTLNNIVARSPLDSGIQSSSVTVAVSPRDYFQQKPHEIAISRTLFFSSG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0563 227 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 197 IPR044817 GO:0003677
Lele42g0563 227 Coils Coil 141 161 - -
Lele42g0563 227 MobiDBLite consensus disorder prediction 159 178 - -
Lele42g0563 227 ProSiteProfiles Zinc finger SBP-type profile. 81 158 IPR004333 GO:0003677
Lele42g0563 227 MobiDBLite consensus disorder prediction 150 178 - -
Lele42g0563 227 Pfam SBP domain 84 157 IPR004333 GO:0003677
Lele42g0563 227 FunFam Squamosa promoter-binding-like protein 14 75 145 - -
Lele42g0563 227 SUPERFAMILY SBT domain 82 161 IPR036893 GO:0003677|GO:0005634
Lele42g0563 227 Gene3D - 79 145 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0563 Lele-ChrLele42 17362138 17363520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0563 22 131 SBP-box Gene Family AT1G02065 73.636 8.24e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele42g0563 SBP 4.9e-31 No_clan