Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0539 ATGCACAGAAAGAGACGTATACATCAATTGAAGCATCCGTTTGATTCTCACCCATTTGAGGCAATTCTCCATGGGTCATGGAAAGCTTTGAGGTACATAACAATTGAAGGAGGAACAGTGGTCTTACATTTTAAAGACAGTAACTATGTGGTTAGGGAGAAAGCTCCCATTTCAGACATTCGAATAAGGTCTAGGAAAGCAACTGTATCAGATTGCTCCTGCTTTTTAAGACCTGGAATTGACATATGTGTACTGTCTTCATTTCAACATACTAATGGCTCAGATCAAAATAGTCTTAATCCTGTGTGGGTTGATGCTAAAATAAGTTCAATACAGAGAAAACCACATGAACCTGGATGCTCCTGTCAGTATTATGTTAACATTTATGTTAATCAAGGTTGTATTGGTTCTGAGATAAGAACTCTGAGTAAGGAGATCAAAGTAGTTGGAATAAGTCAAATTTCTATTCTCCAAAGGCTTGACCATAGTCCTTGTGAAGATCAGCACTATCGGTGGGATTCATCTGAGGACTGGCATGCAGTACCACAAACTAAATTGCTTTCAGGGAAATTTTTATCTGATATTTCATGGTTAATTGTCTCATCAGTTTTAAAGAAGGTTTCATTTTGTGTGAGATCTGTAGGTAACAAGGTTGTCTATCAAATCATGGGGGGTGATGATGGTAGCTCCCTATTGGATGTTGTAAATTTCAGAATAGACAACAGCATGTTAGTACCCATTGTTTCCCAAGTTATTTCATCTGACACTGGTAAGGTTGACAATAGAGATGACTCCCATAAAGATCAAGCGTTTCCATCTTATAATCCTGAGGGTTTGCGTCGTTCCAAACGCCGGAATGTACAACCTGAGCGCTACCTTGGTTGTGATGTGACTGATGTGTTGGATGTTGGTTTCATTCGAACCAGGCCATACAAGATGGACACTCGAAAAGATGATTCTGAGGATGATGAATTGTCAATGCCATTGTCATCCCTGATTGGTTTGCAAAAAAGTTCTGGAGTGAAGGATGAAGACAGTGGACTAATGTTCGATAACATGAAGTACCACAAAAAGCTTAAAGTGTATAAAAGGAGGCCAAAATCTAAGGAGGTGAATGCAGGTGATGCCAATAAAAATGAAATTCAACCTCAACTTGCCATTGTCCCTGTTCCTCAAGAATGTGATCCTATTAACATTGAGCATTTTGATTCCAATGCCAAGGTCTCTAAATATTATGCGCAAAGAAATGTTGAATTTCCTACCAAATATTATCACATGATGGGTAGTCCTGAACCAAAGAGGAATGATATAAATTTGTTAACTTTTGAATCCTATAATCATCCTTTGAAGATTCCAGATCTTGAAGATTATGTTGAAGAGATTGGTGATATTGCTACCCAATGTCATTATAATCATGGCACCCCTAAATTGAAGAGGAGGAATTCATTTGGTTTGGATGATATGGATTTTGAAGGAAGGTGGGAAGGGATAAATTCCAATAAAGCAGTTCAGGGGAGAAAATATCATTCAACGATTTCAAGAGGCAGACAATTTGATGAAGAAAGAAGTTATAAAGCTAGGTCCTTAAGTGCAGGTGCCTACAAGGAATTGATAGACTCATATTTAAAGAATATGAATGCAAAACCATCCAAAGCAGAGCCACCTATTACTGAGCAGTGGATTCAATTCAAGGAAACAAGTAACTCAGGACAAAAGAGGGAAACAAAGGCACCCCAAATAGAGGATGAGGAAGAAACCGATGAACTTGATATATTGTGGAGAGAAATGGAAGTTTCATTGGCATCAAGTTATTTTGAAGATTACACAGAGGGTTCAAGTGCTGCAGTTTTTACTGAGACCTTGGGAAAAACTGATTCACGTTGTTGCCATGATTATAGAATGGATGAAGAAATTGGAATTTACTGTATCTTATGTGGCATCATCCGTATTGAGATTAAAGATATTACGCCACCCTTTTTGGAACGTTCAATGTGGCACCATGAGGAGAAGCAATGCGATGGAGAAAGTTCAGAACCAGAGCCAAAGGTTGATGAAAATGATGGTTTCCATCTTCTGTTGACTGATGCTTTGCCTGATCAACCAATAACCGTAGAAAATGATAATGTATGGGCATTAATTCCTGAACTTAGGTGGAAATTACACATCCACCAACAAAAAGCTTTTGAGTTTCTTTGGAAAAATATTGCTGGATCTATGGACCCCACACTTATGGAAGCAGCATCCAAAAAGAGAGGTGGTTGCGTGATATCTCATTCTCCTGGAGCTGGAAAAACATTCCTTATTATTTCATTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGACCATTGGTTCTTGCTCCGAAGACAACACTTTATACATGGTATAAAGAATTTATTAAATGGAAAATTCCTATTCCAGTGTATCTAATTCATGGCCGTAGAACCTATCGAGCATTCAAGCAGAATACAGTGGTTTTTCATGGTGGTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATACAAAAGTGGCATGCACACCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGAAAGTACATGGCTAAAGTATTAAGGGAAAGTCCTGGTATTCTTATACTGGATGAAGGACACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAAGGTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCAGGTACGTTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTTTGTTTGGCCAGACCAAAGTTTGCTTTTCAAGTGTTGAAAAAACTGGACCCTAAATACAAGAGGAAAATGAAAGGAACAGGAAAAGCACGTCATTTAATAGAGGCGCGAGCTAGAAAATTCTTCTTGGATAATATTGCGAAAAAAGTTGATTCAAATGATGAAAAAGAGCAAATGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTGGTTTTATAGATGTATATGAAAATGGGAATTCAGAGGATCTTCCTGGTTTACAAATCTATACATTATTAATGAATACTACCGATATACAGCATGAGATTTTGAATAAACTCCAGAAGAAAATGTCTGGGTGCAATGGATATCCTTTGGAGTTAGAGCTTTTGATTACCCTTGGATCGATACATCCTTGGTTAGTCAAAACAGCTGCATGTGCTGAAAAGTTTTTCTCTATAGAGCAATTGATGGAGCTAGAGAAATGGAAGTATGATTTAAAAAAAGGGTCAAAAGTGAAATTCGTTTTGAGCCTGGTCTATCGCATTGTCAGAAATGAGAAGATTCTAATGTTTTGCCATAACATTGCACCTGTGAGGTTATTTGCAGAATTATTTGAGAAGTTCTTTGGATGGTATAGAGGTCGAGAAGTCTTAGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGAGGAAGGATAATGGATCAGTTTGAAGATCCTAATGGAGCATCAAAGATACTTCTTGCTTCAATTTCATCTTGTGCGGAAGGCATTAGTTTGACAGCAGCCTCTCGGGTGATTTTGTTGGATTCAGAATGGAATCCATCCAAGACAAAACAGGCTGTTGCACGTGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTACCAGTTGCTGGCAACTGGCACGTTGGAGGAAGAGAAGTATCGAAGAACCACTTGGAAAGAGTGGGTTTCCAGCATGATTTTTAGTGAGGAATTTGTACAGGACCCTTCACGATGGCGAGCAGAAAAGATTGAAGATGATGTACTGCGAGAAATGGTTGCAGAAGACCGCTCCAATTCATTCCATATGATTATGAAGAATGAAAAGGCATCCACAAACTGA 3900 0.3846 MHRKRRIHQLKHPFDSHPFEAILHGSWKALRYITIEGGTVVLHFKDSNYVVREKAPISDIRIRSRKATVSDCSCFLRPGIDICVLSSFQHTNGSDQNSLNPVWVDAKISSIQRKPHEPGCSCQYYVNIYVNQGCIGSEIRTLSKEIKVVGISQISILQRLDHSPCEDQHYRWDSSEDWHAVPQTKLLSGKFLSDISWLIVSSVLKKVSFCVRSVGNKVVYQIMGGDDGSSLLDVVNFRIDNSMLVPIVSQVISSDTGKVDNRDDSHKDQAFPSYNPEGLRRSKRRNVQPERYLGCDVTDVLDVGFIRTRPYKMDTRKDDSEDDELSMPLSSLIGLQKSSGVKDEDSGLMFDNMKYHKKLKVYKRRPKSKEVNAGDANKNEIQPQLAIVPVPQECDPINIEHFDSNAKVSKYYAQRNVEFPTKYYHMMGSPEPKRNDINLLTFESYNHPLKIPDLEDYVEEIGDIATQCHYNHGTPKLKRRNSFGLDDMDFEGRWEGINSNKAVQGRKYHSTISRGRQFDEERSYKARSLSAGAYKELIDSYLKNMNAKPSKAEPPITEQWIQFKETSNSGQKRETKAPQIEDEEETDELDILWREMEVSLASSYFEDYTEGSSAAVFTETLGKTDSRCCHDYRMDEEIGIYCILCGIIRIEIKDITPPFLERSMWHHEEKQCDGESSEPEPKVDENDGFHLLLTDALPDQPITVENDNVWALIPELRWKLHIHQQKAFEFLWKNIAGSMDPTLMEAASKKRGGCVISHSPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRAFKQNTVVFHGGPKPTDDVKHILDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKGLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAFQVLKKLDPKYKRKMKGTGKARHLIEARARKFFLDNIAKKVDSNDEKEQMQGLNMLRKMTSGFIDVYENGNSEDLPGLQIYTLLMNTTDIQHEILNKLQKKMSGCNGYPLELELLITLGSIHPWLVKTAACAEKFFSIEQLMELEKWKYDLKKGSKVKFVLSLVYRIVRNEKILMFCHNIAPVRLFAELFEKFFGWYRGREVLVLTGELELFERGRIMDQFEDPNGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEEKYRRTTWKEWVSSMIFSEEFVQDPSRWRAEKIEDDVLREMVAEDRSNSFHMIMKNEKASTN 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0539 1299 Pfam Helicase conserved C-terminal domain 1102 1218 IPR001650 -
Lele42g0539 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1105 1266 IPR001650 -
Lele42g0539 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 51 1298 IPR044567 GO:0080188
Lele42g0539 1299 SMART helicmild6 1130 1219 IPR001650 -
Lele42g0539 1299 MobiDBLite consensus disorder prediction 564 586 - -
Lele42g0539 1299 Gene3D - 699 986 IPR038718 -
Lele42g0539 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1020 1277 IPR027417 -
Lele42g0539 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 946 IPR027417 -
Lele42g0539 1299 CDD DEXHc_ATRX-like 720 945 - -
Lele42g0539 1299 Gene3D - 1077 1293 IPR027417 -
Lele42g0539 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 944 IPR014001 -
Lele42g0539 1299 Pfam SNF2-related domain 724 989 IPR000330 GO:0005524|GO:0140658
Lele42g0539 1299 MobiDBLite consensus disorder prediction 256 286 - -
Lele42g0539 1299 CDD SF2_C_SNF 1094 1230 - -
Lele42g0539 1299 SMART ultradead3 716 960 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0539 Lele-ChrLele42 14104490 14109858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0539 1145 1237 RAD5 or RAD16-like Gene Family AT5G05130 37.234 2.97e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele42g0539 SNF2_N 3.4e-16 CL0023