Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0524 ATGCCACCGAGGACGGTGAAGAGAGGGGCTGTAGCGGCGGCCAGGAGAGGGGGCAGAGGCGGCAGAGGAACGCCGAAGGCTGCCCAGAATCAACAGAATCTTGATTCTGTACAAGAGGTTGTGAAGCAGGAAGAAAAGCAGGTGGTTGAGGAGAAGCCCGTTGTCGAGGAGAAACCTGTCGTTGAGGAGAAACCTGTTGAAGAGAAGCAAGTAGGTATTGATATGAATCAGATGGCTTTTGATATTAACCAAGTCGCTTCAGAGGCTGAAGAAGCGAATCCTGTCACAAATGGGTCCGCTGCTGTGAAAAATGATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAAAAAGATGAACGCTTAGATCTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCAAGATGATGTTCTGGAGGTGGGAGATGAGATAGAAGAAGAACCTGACGAGAATTTAGGTGAAGAGGAGGGTGATATGGTTGAGGAGGAAGTGGATGACGTTCATGGAGAACTTGAGGGTAAAGAGGATGATGAGCATCCTGGAAAGGAGCATGAGCATGTGGAGATTGCTGATGTAGAAGATGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGCAAGGAATTTGAAGTGTTTGTTGGAGGCTTAGATAAAGATGCTACTGAGGATGATCTGAGGAAGGTTTTTAGTTCAGTTGGTGAGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTACGATTTGCAACTGTGGAACAAGCTAAACGAGCTGTAACTGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGGGTAACCCCTAGTCAGGACAGTGACACCCTCTTTTTAGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAACAATGAGGGAATGAATCGTGGATTTGCCTTTTTAGAATTTTCATCTCGTTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAGATTATGGCGCAGGTTAAAACTGTATTTATTGATGGTCTGCCTCCATCATGGGACGAGGATTGTGTACGGGGTCTTCTTAAGAGATATGGAGAGATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCTAAGAGGAAGGACTTTGGATTTGTTACATTTGATACCCATGATGCTGCTGTGACATGTGCCAAAAGCATTAATAATTCTGAGATAGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTATCGAGACCACTTCAGAGAGGCCATGGAAAACATGGTGGTCGTGGGGACTTTCGGTCTAGCCGTGCTCCTGGAAGAGTCACAAGGCCTTCATGGAGTCGACTGGCACCTCGTAGTTTACCTGCTCGTGGTGTAAGGGGCATTAGTAGCCGTGTTCCTCCAGTTAGGCCTGTTAGTGTGAGAGATAGACGTCCAGCCATGCCAATGACAGTAAGAGCTAGGCCAGTGGCTCCTACGGTTAGATCCTATGATAGGAGACTGGCTGTTCCTGCACACCCAAAAAGTAGCATGAAAAGGGATTATGGTCGGCGTGAGGATTTACCACCACCAAGAAGTAGAGTAGCTCCAGATTACAGCTCTCGGGTGGCCTCTGAGAGACGCCCATCTTACAGGGACTATCCTGCTCGTGGCCATACCTACTCTGAGCTTCCTAGAAGTACTTCATCTCGTGTGGCACCAAGGAGGGGTTATGTGGATGATGGCTATGGTCAAAGATTTGAGAGGCCTCCTCCTCCTCCCCCTCCGCATCCAAGTTACCGTGAAGGACGCCCTCGTGACTATGATACTCTCTCTGGCTCAAAACGCCAATATGCTGCCATAGATGATGTTCCTCCACGATATGCAGACAGTGGTGCTCGCCAATCGAGAGTGCGATTGGACTATGACTGTGGTGGTAGTACTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGCTATGGTGGTGGCAGGAGTTCAATGTCAAGTCAAGACTCACATGGGATGTATAGTAGTCGTCAGGGCATGAGTTACAGTGGAGGTTCTTTTGGTGGCAGTGATGTTGGCGATATGTACTCCTCCAGTTATGGTGGTGATTACATGTCTCGTGGAAATGATGTTGGTGGTGGCTCATACTCGTCACTATATCCTGGCAGAGGTGTGGGTGGTAGTAGCAGTTACATGGGTGGTAGTGGGTCTGGGTCTTATTATTAA 2421 0.4643 MPPRTVKRGAVAAARRGGRGGRGTPKAAQNQQNLDSVQEVVKQEEKQVVEEKPVVEEKPVVEEKPVEEKQVGIDMNQMAFDINQVASEAEEANPVTNGSAAVKNDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQDDVLEVGDEIEEEPDENLGEEEGDMVEEEVDDVHGELEGKEDDEHPGKEHEHVEIADVEDEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSSVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDCVRGLLKRYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGRGDFRSSRAPGRVTRPSWSRLAPRSLPARGVRGISSRVPPVRPVSVRDRRPAMPMTVRARPVAPTVRSYDRRLAVPAHPKSSMKRDYGRREDLPPPRSRVAPDYSSRVASERRPSYRDYPARGHTYSELPRSTSSRVAPRRGYVDDGYGQRFERPPPPPPPHPSYREGRPRDYDTLSGSKRQYAAIDDVPPRYADSGARQSRVRLDYDCGGSTSQYGDAYGDRLGRSSMGYGGGRSSMSSQDSHGMYSSRQGMSYSGGSFGGSDVGDMYSSSYGGDYMSRGNDVGGGSYSSLYPGRGVGGSSSYMGGSGSGSYY 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0524 806 MobiDBLite consensus disorder prediction 1 35 - -
Lele42g0524 806 Coils Coil 99 122 - -
Lele42g0524 806 CDD RRM_SF 225 296 - -
Lele42g0524 806 MobiDBLite consensus disorder prediction 88 197 - -
Lele42g0524 806 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 23 806 - -
Lele42g0524 806 FunFam Heterogeneous nuclear ribonucleoprotein Q 304 386 - -
Lele42g0524 806 MobiDBLite consensus disorder prediction 550 668 - -
Lele42g0524 806 MobiDBLite consensus disorder prediction 479 516 - -
Lele42g0524 806 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 400 482 IPR000504 GO:0003723
Lele42g0524 806 FunFam RNA recognition water-stress protein1 390 511 - -
Lele42g0524 806 SMART rrm1_1 224 297 IPR000504 GO:0003723
Lele42g0524 806 SMART rrm1_1 304 383 IPR000504 GO:0003723
Lele42g0524 806 SMART rrm1_1 401 476 IPR000504 GO:0003723
Lele42g0524 806 MobiDBLite consensus disorder prediction 118 185 - -
Lele42g0524 806 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 293 IPR000504 GO:0003723
Lele42g0524 806 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 402 467 IPR000504 GO:0003723
Lele42g0524 806 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 371 IPR000504 GO:0003723
Lele42g0524 806 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Lele42g0524 806 SUPERFAMILY RNA-binding domain, RBD 301 467 IPR035979 GO:0003676
Lele42g0524 806 MobiDBLite consensus disorder prediction 724 742 - -
Lele42g0524 806 Gene3D - 390 508 IPR012677 -
Lele42g0524 806 Coils Coil 27 47 - -
Lele42g0524 806 CDD RRM_SF 305 372 - -
Lele42g0524 806 SUPERFAMILY RNA-binding domain, RBD 224 327 IPR035979 GO:0003676
Lele42g0524 806 MobiDBLite consensus disorder prediction 103 117 - -
Lele42g0524 806 MobiDBLite consensus disorder prediction 565 589 - -
Lele42g0524 806 Gene3D - 148 303 IPR012677 -
Lele42g0524 806 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 157 303 - -
Lele42g0524 806 MobiDBLite consensus disorder prediction 706 742 - -
Lele42g0524 806 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 387 IPR000504 GO:0003723
Lele42g0524 806 CDD RRM_SF 402 467 - -
Lele42g0524 806 Gene3D - 304 386 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0524 Lele-ChrLele42 6679767 6684780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0524 225 462 Eukaryotic Initiation Factors Gene Family AT4G34110 24.000 2.84e-14 74.7