Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0472 ATGGGTTCTTCTTTTCTGAACACTCCATATAAGCCATGGACGCCTGCAGATTCTGTTCTTCGAGATTGTTCTCAAGGAATCTGCAGCTTCTATTGCCCTCAATGGTGCTCCGTCGTCTACCCTCCTCCTCCTTTACCTTCTCTCACAGCCATCGGAGTCGCCGCCTCTGCTACTGCCGGTGACGATGACTCTTCTTCATTCCGGCCATCTCCCCTCATAGTGGCTCTCATCGGCATCTTAGGAAGTGTTTTCGTCTTAATCACTTACTACACTATCATCTCTCGATTCTGCACAAGACGCACCCGAATCCACCAAAACGACACCAACCAAGGGCTAAACGACAATAACGAGTCGGCGATTCAAGGCTCGTCTTCTTCCGCTAATACCGGCGGCGGCGGCTTAGACGACACCGTCATCAGATCTATCCCAGTCTGTAAGTACAAGAAAGGAGATGGATTAGTCGAAGGTACGAATTGCTCTGTATGTCTCAGCGAATTCCAAGATTGCGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCATCTTCCTTGTATCGATACATGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCCAATATCGTCGAATCCAACACTTGTTCTTCTTCTTCTTCTTCTGGTAATTTACCGAATCAAAGAGAGAATTCTCAGTTGCAGGAAGCTTCGCGAACACAGAGCATACATGTGTCTGCGTTGGAATACCAGTATAGGAACGAAACAGTAATAGTGATTCAGGGTTCAGAACAGGAAATTCAGGTCGGTTTTGCAGGGAATTTGGAGGAGAGGAATGGGAGTGAATCGAATCGTCAAGGAAGATTGTTGTTGGTTGCTGATATATTGAGGAGTAGTGAAGATGAGGATGAAGAAATCGAGATTGGATCGTCGAAGGAAAATCGAGATTTGATTCATTTTCCTGGAAAATTTGTGTACACGGAGACTCAAACTTGA 978 0.4581 MGSSFLNTPYKPWTPADSVLRDCSQGICSFYCPQWCSVVYPPPPLPSLTAIGVAASATAGDDDSSSFRPSPLIVALIGILGSVFVLITYYTIISRFCTRRTRIHQNDTNQGLNDNNESAIQGSSSSANTGGGGLDDTVIRSIPVCKYKKGDGLVEGTNCSVCLSEFQDCESLRLLPKCNHAFHLPCIDTWLRSHSSCPLCRSNIVESNTCSSSSSSGNLPNQRENSQLQEASRTQSIHVSALEYQYRNETVIVIQGSEQEIQVGFAGNLEERNGSESNRQGRLLLVADILRSSEDEDEEIEIGSSKENRDLIHFPGKFVYTETQT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0472 325 Pfam Ring finger domain 158 201 IPR001841 -
Lele42g0472 325 CDD RING-H2_EL5_like 159 201 - -
Lele42g0472 325 FunFam RING-H2 finger protein ATL54 134 207 - -
Lele42g0472 325 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Lele42g0472 325 MobiDBLite consensus disorder prediction 211 232 - -
Lele42g0472 325 MobiDBLite consensus disorder prediction 107 132 - -
Lele42g0472 325 SUPERFAMILY RING/U-box 141 207 - -
Lele42g0472 325 PANTHER RING-H2 FINGER PROTEIN ATL16 63 274 IPR044600 GO:0016567|GO:0016740
Lele42g0472 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 207 IPR013083 -
Lele42g0472 325 SMART ring_2 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0472 Lele-ChrLele42 4693436 4694413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0472 12 306 C3H Transcription Factor Family AT3G03550 44.762 1.10e-68 216