Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0443 ATGAAGCTTACCGTCAAGACTTTGAAAGGAAGCCATTTCGAAATCAGGGTTCAACCTTCAGACACTGTCATGGCTGTCAAGAAGAATATAGAAGATGTACAAGGAAAAGATAATTACCCATGCGGACAGCAGTTGCTTATTTTTAATGGCAAAGTTTTGAAAGATGAAACTACACTAGCGGAGAACCAGGTCTCTGAAAATGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAAGTTCAGCTGGGGCTTCATCCACTCAGCCTGCTACCAATCCATCTACAACTGTATCAACCCAAAATTCGACTCCTCCTGCACCTGAACCTCCAGTACAAAGTACTCAGGCTACAGTGAATAGTTCTTCCCCGGAAAACGTCACAGCTACAAATGTTCCTGTGGATACTTATGGTCAGGCTGCTTCAAATTTAGCTGTCGGTGGTGATCTTGAGCGGACTATTCAACAAATCATGGACATGGGAGGCGGCAATTGGGACAGAGAGACAGTTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAGGTTGCCATACCAGTTCCTCATTACCCAGCCAGTCAGACAACTGAAACAGGTGGGGCAACTGCTGGAGGTGTTTCTGGGGCACCTAATACATCACCGTTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTGGAATTCCTTAGAAACAACCCCCAGTTTCAAGCACTGCGATCCATGGTACATTCTAATCCTCAAATTCTGCAGCCTGTACTTCAAGAGCTTGGAAAGCAGAATCCTCATCTATTGAGACTAATTCAGGAGCATCATGCTGAATTTCTTCAGTTAATGAATGAACCCATGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGACATGCCCCACTCCATCAATGTGACACCAGCAGAACAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTGGCTTGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAGAATGCTGGAGATTTTGAGGATTGA 1122 0.451 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTLAENQVSENGFLVVMLSKSKTSSSAGASSTQPATNPSTTVSTQNSTPPAPEPPVQSTQATVNSSSPENVTATNVPVDTYGQAASNLAVGGDLERTIQQIMDMGGGNWDRETVIRALRAAYNNPERAVDYLYSGIPEAAEVAIPVPHYPASQTTETGGATAGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPMEGSEGDIFDQPEQDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0443 373 Pfam UBA/TS-N domain 151 188 IPR015940 -
Lele42g0443 373 Pfam UBA/TS-N domain 329 364 IPR015940 -
Lele42g0443 373 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele42g0443 373 SUPERFAMILY UBA-like 148 198 IPR009060 GO:0005515
Lele42g0443 373 FunFam UV excision repair protein RAD23 B 238 304 - -
Lele42g0443 373 SMART uba_6 150 190 IPR015940 -
Lele42g0443 373 SMART uba_6 329 366 IPR015940 -
Lele42g0443 373 Gene3D - 320 368 - -
Lele42g0443 373 FunFam UV excision repair protein RAD23 1 80 - -
Lele42g0443 373 Gene3D - 238 304 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele42g0443 373 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Lele42g0443 373 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele42g0443 373 Gene3D - 143 193 - -
Lele42g0443 373 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 151 191 IPR015940 -
Lele42g0443 373 MobiDBLite consensus disorder prediction 80 133 - -
Lele42g0443 373 CDD Ubl_Rad23 1 74 - -
Lele42g0443 373 Gene3D - 1 80 - -
Lele42g0443 373 FunFam UV excision repair protein RAD23 homolog 143 193 - -
Lele42g0443 373 MobiDBLite consensus disorder prediction 80 103 - -
Lele42g0443 373 SMART CBM 246 289 IPR006636 -
Lele42g0443 373 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 362 - -
Lele42g0443 373 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele42g0443 373 FunFam UV excision repair protein RAD23 homolog 320 368 - -
Lele42g0443 373 Pfam XPC-binding domain 248 303 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele42g0443 373 MobiDBLite consensus disorder prediction 113 133 - -
Lele42g0443 373 SUPERFAMILY UBA-like 308 370 IPR009060 GO:0005515
Lele42g0443 373 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 327 367 IPR015940 -
Lele42g0443 373 TIGRFAM rad23: UV excision repair protein Rad23 1 372 IPR004806 GO:0006289
Lele42g0443 373 PRINTS DNA repair protein Rad23 signature 323 339 IPR004806 GO:0006289
Lele42g0443 373 PRINTS DNA repair protein Rad23 signature 274 296 IPR004806 GO:0006289
Lele42g0443 373 PRINTS DNA repair protein Rad23 signature 340 354 IPR004806 GO:0006289
Lele42g0443 373 PRINTS DNA repair protein Rad23 signature 355 370 IPR004806 GO:0006289
Lele42g0443 373 SUPERFAMILY XPC-binding domain 245 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0443 Lele-ChrLele42 4164268 4175852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0443 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 3.60e-07 47.8