Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0423 ATGCAATGGGTATACTGTATGGTCCAATATAATTCATATCTTCACTTTTTGCGCATGCACGAGACAATGCTGCTGGGGCAAGCACCTCCTGTTAGCTTCCGAACCAAACCAAATTGCTTGGAATTGCAGATTCGAAGCCATGCGCATCTCTTTTCCTTTGCTCAGACTTCTTTCTGTGACACCCCATGTACGAAAATGCTGCGCACAAGTGTTGGGAATGCATTTCTCGGCAGAGCTGGGCGTTCTCCTACACCCAAAGACGTTGTTTCTTGGAACCCTAACCCCGCTAACGATGCTCTGAGCTCGAATGTAGAGAATTCATCAGATATAAGTTTTGTAACTGAAGGCTTTGAGCGTGACTCGGTTATTACAAATAGTGATTCTACAATAAAATCTAAGGGGAGGTTATCTGGAAGTTTTGGCAAACTGAAAGCACAGAAAGTCAAGGCCCTTATCCACAGAACTATTCACAAGAAGCAGGAAAGAAGCATTAATGATGATAACCTAGTTGTAGAACATCCAGAATTTGGAATAGAAGATGATTGGGAACAATCTGAGGGATCTAGTTCTCACGTAGGATATCAGAACACACCCAATAAATCTCGAAAAAATGACAACAGAATAGAGAGTTCAGGTATATTAGTTGAAAGGCATTCTACCTCTCGTTCAAAAGGATGGGGAGGTGGAGAATCTCCACGTACCTTTAAGACTGAATCACAAAAACTGGTAAAGGAACAAAGAAAACCATTGTCTGACAGTGACTTTTTTAGTCGAAAGTCCTTCAAAGATCTTGGGTACAGTGAATATATGATTGAATCTCTGGCAAAGCAATTTTATCGAAGGCCTTCAAATATACAGGCCATGGCATTTGAACCAGTATATACTGGAAAGAGTTGTATAATAGCTGATCAAAGTGGTTCTGGAAAGACTCTAGCTTATCTTGCACCAATAATTCAGAAGCTTAGACAAGAAGAATTGGAAGGGCTTGCCAATTCCTCTTCACAAGATCCTCGAGTGGTTATATTGGCTCCAACAGCTGAGTTAGCTTCTCAGGTGTTAGCTAATTGTCGATCAATGTCAAAATCTGGGGCTCCATTCAAATCTATGGTTGTAACAGGTGGCTTTCGACAGAGAACTCAACTGGAGAATTTAGAGCAGGGTGTTGATGTTTTAATAGCAACACCTGGCCGTTTTATGTTCCTCATCAAGGAAGGCTTCTTGCAGTTAACGAATTTAAGATGTGCAGTGTTGGATGAGGTAGATATACTTTTTGGTGATGAGGATTTTGAAGTGTCGCTTCAGTGTTTGATTAATTCTTCACCAGTTACCACACAATATTTATTTGTGACTGCAACTTTACCAAAAGATATTTACAATAAACTAGTTGAAGTTTTTCCTGATTGTGGAGTGATCATGGGACCTGGTATGCACCGGATAAGCTCTCGACTGGAAGAGGTTCTAGTTGATTGCAGTGGAGCTGATGGGGAAGAAAAATCCCCCGATACAGCATTTCTTAATAAGAAAACAGCTCTTGTACAGATTGCAGAAGCAAGTCCTGTCCCAAAAACCATTGTCTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAGAATACATTGAAGCGTTTCGATAGGAAAGAGACTCGTGTACAAGTTCTACCTTTCCATGCTGCCACGACACAGGAATTACGGCTTGCTAATATGGAAAAGTTTACACGTTCTCAACCAAAGGAAGTCTCCCAGTTTCTGGTTTGCACAGACAGAGCTTCACGCGGGATTGACTTTACCGGAGTGGATCATGTTATACTTTTCGACTTCCCACGTGATCCGAGTGAATATGTGCGCCGTGTCGGAAGAACTGCAAGAGGTGCTGCTGGAAAGGGTAAGGCATACATCTTTGTGGTTGGCAAGCAAGTATCACTTGCACGTAAAATCATGGATAGAAATAGGAAGGGTCACCCTCTACACGATGTGCCTTCTGCCTATGAGCTCATGAAGTAG 2001 0.4183 MQWVYCMVQYNSYLHFLRMHETMLLGQAPPVSFRTKPNCLELQIRSHAHLFSFAQTSFCDTPCTKMLRTSVGNAFLGRAGRSPTPKDVVSWNPNPANDALSSNVENSSDISFVTEGFERDSVITNSDSTIKSKGRLSGSFGKLKAQKVKALIHRTIHKKQERSINDDNLVVEHPEFGIEDDWEQSEGSSSHVGYQNTPNKSRKNDNRIESSGILVERHSTSRSKGWGGGESPRTFKTESQKLVKEQRKPLSDSDFFSRKSFKDLGYSEYMIESLAKQFYRRPSNIQAMAFEPVYTGKSCIIADQSGSGKTLAYLAPIIQKLRQEELEGLANSSSQDPRVVILAPTAELASQVLANCRSMSKSGAPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVSLQCLINSSPVTTQYLFVTATLPKDIYNKLVEVFPDCGVIMGPGMHRISSRLEEVLVDCSGADGEEKSPDTAFLNKKTALVQIAEASPVPKTIVFCNKIETCRKVENTLKRFDRKETRVQVLPFHAATTQELRLANMEKFTRSQPKEVSQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAAGKGKAYIFVVGKQVSLARKIMDRNRKGHPLHDVPSAYELMK 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0423 666 Pfam DEAD/DEAH box helicase 284 457 IPR011545 GO:0003676|GO:0005524
Lele42g0423 666 CDD DEADc 270 459 - -
Lele42g0423 666 Gene3D - 228 468 IPR027417 -
Lele42g0423 666 CDD SF2_C_DEAD 507 634 - -
Lele42g0423 666 SMART helicmild6 534 624 IPR001650 -
Lele42g0423 666 SMART ultradead3 278 486 IPR014001 -
Lele42g0423 666 Pfam Helicase conserved C-terminal domain 509 623 IPR001650 -
Lele42g0423 666 Gene3D - 493 657 IPR027417 -
Lele42g0423 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 635 IPR027417 -
Lele42g0423 666 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 259 287 IPR014014 GO:0003724
Lele42g0423 666 MobiDBLite consensus disorder prediction 180 244 - -
Lele42g0423 666 MobiDBLite consensus disorder prediction 187 201 - -
Lele42g0423 666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 506 666 IPR001650 -
Lele42g0423 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 265 586 IPR014013 GO:0005524
Lele42g0423 666 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 183 663 - -
Lele42g0423 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 471 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0423 Lele-ChrLele42 3804998 3814203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0423 260 645 Eukaryotic Initiation Factors Gene Family AT3G19760 27.461 3.33e-29 118