Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele42g0423 | ATGCAATGGGTATACTGTATGGTCCAATATAATTCATATCTTCACTTTTTGCGCATGCACGAGACAATGCTGCTGGGGCAAGCACCTCCTGTTAGCTTCCGAACCAAACCAAATTGCTTGGAATTGCAGATTCGAAGCCATGCGCATCTCTTTTCCTTTGCTCAGACTTCTTTCTGTGACACCCCATGTACGAAAATGCTGCGCACAAGTGTTGGGAATGCATTTCTCGGCAGAGCTGGGCGTTCTCCTACACCCAAAGACGTTGTTTCTTGGAACCCTAACCCCGCTAACGATGCTCTGAGCTCGAATGTAGAGAATTCATCAGATATAAGTTTTGTAACTGAAGGCTTTGAGCGTGACTCGGTTATTACAAATAGTGATTCTACAATAAAATCTAAGGGGAGGTTATCTGGAAGTTTTGGCAAACTGAAAGCACAGAAAGTCAAGGCCCTTATCCACAGAACTATTCACAAGAAGCAGGAAAGAAGCATTAATGATGATAACCTAGTTGTAGAACATCCAGAATTTGGAATAGAAGATGATTGGGAACAATCTGAGGGATCTAGTTCTCACGTAGGATATCAGAACACACCCAATAAATCTCGAAAAAATGACAACAGAATAGAGAGTTCAGGTATATTAGTTGAAAGGCATTCTACCTCTCGTTCAAAAGGATGGGGAGGTGGAGAATCTCCACGTACCTTTAAGACTGAATCACAAAAACTGGTAAAGGAACAAAGAAAACCATTGTCTGACAGTGACTTTTTTAGTCGAAAGTCCTTCAAAGATCTTGGGTACAGTGAATATATGATTGAATCTCTGGCAAAGCAATTTTATCGAAGGCCTTCAAATATACAGGCCATGGCATTTGAACCAGTATATACTGGAAAGAGTTGTATAATAGCTGATCAAAGTGGTTCTGGAAAGACTCTAGCTTATCTTGCACCAATAATTCAGAAGCTTAGACAAGAAGAATTGGAAGGGCTTGCCAATTCCTCTTCACAAGATCCTCGAGTGGTTATATTGGCTCCAACAGCTGAGTTAGCTTCTCAGGTGTTAGCTAATTGTCGATCAATGTCAAAATCTGGGGCTCCATTCAAATCTATGGTTGTAACAGGTGGCTTTCGACAGAGAACTCAACTGGAGAATTTAGAGCAGGGTGTTGATGTTTTAATAGCAACACCTGGCCGTTTTATGTTCCTCATCAAGGAAGGCTTCTTGCAGTTAACGAATTTAAGATGTGCAGTGTTGGATGAGGTAGATATACTTTTTGGTGATGAGGATTTTGAAGTGTCGCTTCAGTGTTTGATTAATTCTTCACCAGTTACCACACAATATTTATTTGTGACTGCAACTTTACCAAAAGATATTTACAATAAACTAGTTGAAGTTTTTCCTGATTGTGGAGTGATCATGGGACCTGGTATGCACCGGATAAGCTCTCGACTGGAAGAGGTTCTAGTTGATTGCAGTGGAGCTGATGGGGAAGAAAAATCCCCCGATACAGCATTTCTTAATAAGAAAACAGCTCTTGTACAGATTGCAGAAGCAAGTCCTGTCCCAAAAACCATTGTCTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAGAATACATTGAAGCGTTTCGATAGGAAAGAGACTCGTGTACAAGTTCTACCTTTCCATGCTGCCACGACACAGGAATTACGGCTTGCTAATATGGAAAAGTTTACACGTTCTCAACCAAAGGAAGTCTCCCAGTTTCTGGTTTGCACAGACAGAGCTTCACGCGGGATTGACTTTACCGGAGTGGATCATGTTATACTTTTCGACTTCCCACGTGATCCGAGTGAATATGTGCGCCGTGTCGGAAGAACTGCAAGAGGTGCTGCTGGAAAGGGTAAGGCATACATCTTTGTGGTTGGCAAGCAAGTATCACTTGCACGTAAAATCATGGATAGAAATAGGAAGGGTCACCCTCTACACGATGTGCCTTCTGCCTATGAGCTCATGAAGTAG | 2001 | 0.4183 | MQWVYCMVQYNSYLHFLRMHETMLLGQAPPVSFRTKPNCLELQIRSHAHLFSFAQTSFCDTPCTKMLRTSVGNAFLGRAGRSPTPKDVVSWNPNPANDALSSNVENSSDISFVTEGFERDSVITNSDSTIKSKGRLSGSFGKLKAQKVKALIHRTIHKKQERSINDDNLVVEHPEFGIEDDWEQSEGSSSHVGYQNTPNKSRKNDNRIESSGILVERHSTSRSKGWGGGESPRTFKTESQKLVKEQRKPLSDSDFFSRKSFKDLGYSEYMIESLAKQFYRRPSNIQAMAFEPVYTGKSCIIADQSGSGKTLAYLAPIIQKLRQEELEGLANSSSQDPRVVILAPTAELASQVLANCRSMSKSGAPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVSLQCLINSSPVTTQYLFVTATLPKDIYNKLVEVFPDCGVIMGPGMHRISSRLEEVLVDCSGADGEEKSPDTAFLNKKTALVQIAEASPVPKTIVFCNKIETCRKVENTLKRFDRKETRVQVLPFHAATTQELRLANMEKFTRSQPKEVSQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAAGKGKAYIFVVGKQVSLARKIMDRNRKGHPLHDVPSAYELMK | 666 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele42g0423 | 666 | Pfam | DEAD/DEAH box helicase | 284 | 457 | IPR011545 | GO:0003676|GO:0005524 | |
Lele42g0423 | 666 | CDD | DEADc | 270 | 459 | - | - | |
Lele42g0423 | 666 | Gene3D | - | 228 | 468 | IPR027417 | - | |
Lele42g0423 | 666 | CDD | SF2_C_DEAD | 507 | 634 | - | - | |
Lele42g0423 | 666 | SMART | helicmild6 | 534 | 624 | IPR001650 | - | |
Lele42g0423 | 666 | SMART | ultradead3 | 278 | 486 | IPR014001 | - | |
Lele42g0423 | 666 | Pfam | Helicase conserved C-terminal domain | 509 | 623 | IPR001650 | - | |
Lele42g0423 | 666 | Gene3D | - | 493 | 657 | IPR027417 | - | |
Lele42g0423 | 666 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 293 | 635 | IPR027417 | - | |
Lele42g0423 | 666 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 259 | 287 | IPR014014 | GO:0003724 | |
Lele42g0423 | 666 | MobiDBLite | consensus disorder prediction | 180 | 244 | - | - | |
Lele42g0423 | 666 | MobiDBLite | consensus disorder prediction | 187 | 201 | - | - | |
Lele42g0423 | 666 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 506 | 666 | IPR001650 | - | |
Lele42g0423 | 666 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. | 265 | 586 | IPR014013 | GO:0005524 | |
Lele42g0423 | 666 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 183 | 663 | - | - | |
Lele42g0423 | 666 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 290 | 471 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele42g0423 | Lele-ChrLele42 | 3804998 | 3814203 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele42g0423 | 260 | 645 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 27.461 | 3.33e-29 | 118 |