Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0411 ATGCAGAGTTCTCTTCCTAGTTCAATTGAAGCTGCTTTATTTCATGCATCTGATAAAGGGAAAAAAGATGCTCTATGTGACTGGATGCCTAGTGCTGAAACTTGGCAGGTGTGCCTGAAATGCAAAAAGTACCCACTTTACTGCTGCAGAAAAGTTGAAGCAATGAAAGAGCAGGAGGATAGAAGGAGTGATGATGTTCTATGCTGCAGAAAAGTTGAAGCAATGCATGAGCAAGAGGATAGAAGGAATGGTGATGTTCCATGCTGCAGAAAAGTTGAAGCAATGCAAGAGCAAGAGGATAGAAGGAATGATGATGTTCCGTGCAGCTCAAACTGTATAAGTAGCTTAGATCGACCATCAACTGCCAGTACAATGACAGGAAATACTTTGCCCAATCTAGTATACAAGAGAAAGAAGGTACGGAAGAATTCAACCGCACCTCTTTTAAAAGTAGGACCTATGTCTGTGCCAGCTAGTGCCAATTGCACTTCATTCGTAAGCCCCTGTTCTCATAGATTACCATTGGAGCATCAGCTAGCCAGCTCTCAAGTTGAGCAAGATATTGAAATGGGTAAAGACCCTGTTGCACCCATTGTCTTATGCAAAACAGCAATAGATAACAGCACACCTAAAAATTTAGGTATTGACTGCATTAATGATAGTTGCTCCTCATCAAAATCAATTATGGAAATTGTTTCAGAATCCATAGAAACTGGAGTGTATGACACTGGCGAATGCTCCTCCTCTAGTGTTTTAGTCATGGATGTCCCTAGGGAAGACCTAACAGCAAAGGATTTCTGCATCAAAATTCTAAGAAGCCATGGACTCCTTGGAGGAGATTCTCATGCTGATACTGTAGTTTCTCAAGCACAGGCTACTACCTCTGGTAATAGTTGCAGTTCCCGGTCATGCAAAATATGTGGCCATTTGGATGGCTCATTGAACATGCTTATATGTGATCATTGTGAAGAGGCATACCATCCATCCTGCATCATTCCGCAAATGAAAAAGTTACCAATTGATGAATGGTTTTGTCATTCATGTATAAAAAAGAAGCAAAAAATTCTTAAGGAGATGATTATTAGAAGTTCACCAAATATCAACATTGAAATGGAATTATGCAGATCTTCCTCAGTTAATGGAGGATTGAATCCTATACTGTTGATGTTGAATGATTTTGAGCCAAGTACAACTGGTGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGAATGGTTAGGTCCAATAGGAAGGTATGCTCTTCTTGTGATCTTTATTGAGTTGATGACTAGATTTGTTGCAAGAAGCGATGATGACTGTGCTGAACCATTGGAAATTGGTTCTTCAGAATTTTCCAGTTTACCGGAAAAGAATCTCAAAAGGCCAACTAGACTCAGCTCCATTGGTAATTGGCTTCAGTGTCAAGAGGTCGTAGATAGAGCCAAAGGAACTATATGTGGGAAATTTCGCAGGGCTCCCCTTTTTGAAGTCCAAACTGATAATTGGGAGTGCTTCTGTGCCATTCATTGGGATCCAGCTCATGCTGATTGTGCTGTACCTCAGGAGTTGGAAACAGATCAAGTTCTGAAGCAACTGAAGTATATAGAAATGTTGAGGCCACGACTCTCCGCAAAACGTTCAAAATTCAACGGCAAAAAGGGTGGTGAATGA 1674 0.4086 MQSSLPSSIEAALFHASDKGKKDALCDWMPSAETWQVCLKCKKYPLYCCRKVEAMKEQEDRRSDDVLCCRKVEAMHEQEDRRNGDVPCCRKVEAMQEQEDRRNDDVPCSSNCISSLDRPSTASTMTGNTLPNLVYKRKKVRKNSTAPLLKVGPMSVPASANCTSFVSPCSHRLPLEHQLASSQVEQDIEMGKDPVAPIVLCKTAIDNSTPKNLGIDCINDSCSSSKSIMEIVSESIETGVYDTGECSSSSVLVMDVPREDLTAKDFCIKILRSHGLLGGDSHADTVVSQAQATTSGNSCSSRSCKICGHLDGSLNMLICDHCEEAYHPSCIIPQMKKLPIDEWFCHSCIKKKQKILKEMIIRSSPNINIEMELCRSSSVNGGLNPILLMLNDFEPSTTGVRVGKGFQAEVPEWLGPIGRYALLVIFIELMTRFVARSDDDCAEPLEIGSSEFSSLPEKNLKRPTRLSSIGNWLQCQEVVDRAKGTICGKFRRAPLFEVQTDNWECFCAIHWDPAHADCAVPQELETDQVLKQLKYIEMLRPRLSAKRSKFNGKKGGE 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0411 557 FunFam uncharacterized protein LOC106759733 isoform X4 470 535 - -
Lele42g0411 557 Pfam PHD-finger 304 350 IPR019787 -
Lele42g0411 557 ProSiteProfiles Zinc finger PHD-type profile. 301 351 IPR019787 -
Lele42g0411 557 ProSiteProfiles Zinc finger CW-type profile. 466 526 IPR011124 GO:0008270
Lele42g0411 557 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 297 357 - -
Lele42g0411 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 360 IPR013083 -
Lele42g0411 557 SUPERFAMILY FYVE/PHD zinc finger 290 354 IPR011011 -
Lele42g0411 557 FunFam RING/FYVE/PHD zinc finger superfamily protein 292 370 - -
Lele42g0411 557 SMART PHD_3 303 349 IPR001965 -
Lele42g0411 557 Gene3D - 470 535 - -
Lele42g0411 557 ProSitePatterns Zinc finger PHD-type signature. 304 348 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0411 Lele-ChrLele42 3684760 3692341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0411 304 377 C2H2 Transcription Factor Family AT3G01460 32.051 1.11e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele42g0411 PHD 1.9e-09 CL0390