Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0403 ATGGTTGATATGGAGGAAGAAGATAAAAAAGAATTGTACTTCAAAAAGGGTTGGGCTAAATTTGTAAAAGACAATGCTTTAGAGGCTGGGGACTTCATAGTTTTCCAATTTGATGGGAAATCAAGATTCAATGTTACTCTCTGTGGAAAATCTGCCTGCGAGAAGAAGCTCGAGATCAGTCGGGCAAAGGCATCACATATCGATCAGAATCATCACAAACGGAAAGGAAAAGATCCGATTGATGATGTTGAAAGACAAACGGTGAAGCTCAAGCTTGATCATGTTAAGATCGAGGAGGAGACAATGGAATCCCACGATTATGGCACTTCTAGCCAAGAAACGTTTTCTTGGGATGAAACATGGGCATCCCAGTCTGAAGATGAAGAAGATGATGAAGAAGAAGAAGAAGAAAGTGATGAGTTTAATGATATTAAATCTGGACCTCATGATTCTATGGTGAATATTGGGGAAGGCAACCTCTCGGGCTCTGTGATTCCTTCATTCTCAGTACATCTCCAAGCTGCCTACGCAAAAGGGGGTTGCATGTGCATTCCAACAGATTTCTTCAAGGAGCACATAAGAAAAGAGAAACAAGAGGTGGAGATTGAGACAATGAAAGGAGTATGGAAAGTCACATTACTTCCCCACAAGAAAAGAGAACGTACATTTGCTAGGTTCAGTAAAGGTTGGTCGGAGTTTGCCAGACTGAATCGTTTTAAGATCGGTCAGACTCTCTATTTTAAAATGGTTCGGAGAGGCAAGTGTCCCAAGTTCATTGTTAGTAGGGCACCGGATACCGCATGA 804 0.4167 MVDMEEEDKKELYFKKGWAKFVKDNALEAGDFIVFQFDGKSRFNVTLCGKSACEKKLEISRAKASHIDQNHHKRKGKDPIDDVERQTVKLKLDHVKIEEETMESHDYGTSSQETFSWDETWASQSEDEEDDEEEEEESDEFNDIKSGPHDSMVNIGEGNLSGSVIPSFSVHLQAAYAKGGCMCIPTDFFKEHIRKEKQEVEIETMKGVWKVTLLPHKKRERTFARFSKGWSEFARLNRFKIGQTLYFKMVRRGKCPKFIVSRAPDTA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0403 267 MobiDBLite consensus disorder prediction 64 83 - -
Lele42g0403 267 Pfam B3 DNA binding domain 8 49 IPR003340 GO:0003677
Lele42g0403 267 Pfam B3 DNA binding domain 171 259 IPR003340 GO:0003677
Lele42g0403 267 SMART B3_2 168 264 IPR003340 GO:0003677
Lele42g0403 267 CDD B3_DNA 6 48 IPR003340 GO:0003677
Lele42g0403 267 Gene3D - 1 53 IPR015300 -
Lele42g0403 267 MobiDBLite consensus disorder prediction 107 121 - -
Lele42g0403 267 ProSiteProfiles B3 DNA-binding domain profile. 167 264 IPR003340 GO:0003677
Lele42g0403 267 MobiDBLite consensus disorder prediction 101 153 - -
Lele42g0403 267 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 2 254 IPR039218 -
Lele42g0403 267 SUPERFAMILY DNA-binding pseudobarrel domain 165 253 IPR015300 -
Lele42g0403 267 Coils Coil 80 100 - -
Lele42g0403 267 MobiDBLite consensus disorder prediction 122 141 - -
Lele42g0403 267 ProSiteProfiles B3 DNA-binding domain profile. 1 51 IPR003340 GO:0003677
Lele42g0403 267 SUPERFAMILY DNA-binding pseudobarrel domain 10 56 IPR015300 -
Lele42g0403 267 CDD B3_DNA 166 262 IPR003340 GO:0003677
Lele42g0403 267 Gene3D - 149 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0403 Lele-ChrLele42 3561127 3563341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0403 2 59 B3 DNA Binding Superfamily AT5G66980 42.623 5.65e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele42g0403 B3 2.2e-10 CL0405