Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0402 ATGTCTGCATATTCGATCGGACTCTGTTCTTTGGTATCTATCGATCTGCCGTTGTATCAATTTGTGCTAGAAATTTTTGCGGGATTGCTCTGGCGAATCCCTCCCCTGTTCGTGTCCAGATTTTCTTGTCTTACACCAAAAGCAGTAACACTTTTCTGTTCTTCACAAAGATCATGGACGGTTGATATTGAGGAAGAAGATAACAAAGAATTGTATTTCAAAAGAGGTTGGAATACATTTGTAGAAGACAATGCTTTAGAAACAGGGGAGTTCATAGTTTTCAAATTTGATGGTAATTCAACATTCAAAGCTAAAATCTATGGAAAATCTTACCTCAGAAAGAATAAATCCTCAATTTCAGTGTCTTCTTTCTTCAAGATCCTTATCAACGCCGAGAATACTACTAAATTGCGAATCCCTTTGTTGTTCGTGGCCCGATATTCTACTCTTGTCCCAAGAAGATTAACATTTATAAGGGCTTCTTCAAACAGATCGTGGAAGGTTGATATTGAGGAAGAAGATGACAAAAGGTTTTATTATAAAAGTGGTTGGAGTACATTTGTAGAAGATAATGCTGTGGAAATAGCACAGCTTCTGGTTTTCAAATTTGTTGGGGACTCAACATTTAAAGTTAAGATCTTTGGGAACTCTGCTTGCGAGAAGGAGCTCGAGAATCTGCCATGTGTCAATCAGAATTACTGCATACAGCATCATATAAAACAAACAGCAACTCAAGATCATCAAGAAAATCAGAAAGAAGAAAGAGATCCAAATCCAATTGATGATGTAGATGGACAAAAGTCGAAGATCGATGATGTAGATGGACAAAAGTCGAAGATCGATGATGTAGATGGACAAAAGTCGAAGATCGATGATGTAGATGGACAAAAGTCGAAGATCAATGATTTGGATGGACAAAAGTCAAAGCCAAATGTTGAAACGATGATGGAGACGGTAGATGTAGTTATAGATGATGATGGTGGCGGTAGTGGTGATTCTAACCAAGAAACTGAGGCTCCCCAGGAAGAAGTTGAAGAACAAAGCGATGAACCTATTGTTATTGAACCTGATCCATCTCATAGCCCTATGAAGAAGAGAACTGGCAGCCGTGAGTACGAGGGACCGATGATTAAAGCATCTTGTAAACGCCTCAAGTTGGATTCTAAGAAGAATCCTTCATTCAAAATTTTCCTGAAACCAGCCTATGCTGAAAAGGGTGTCATGGTGGGTTAG 1233 0.3877 MSAYSIGLCSLVSIDLPLYQFVLEIFAGLLWRIPPLFVSRFSCLTPKAVTLFCSSQRSWTVDIEEEDNKELYFKRGWNTFVEDNALETGEFIVFKFDGNSTFKAKIYGKSYLRKNKSSISVSSFFKILINAENTTKLRIPLLFVARYSTLVPRRLTFIRASSNRSWKVDIEEEDDKRFYYKSGWSTFVEDNAVEIAQLLVFKFVGDSTFKVKIFGNSACEKELENLPCVNQNYCIQHHIKQTATQDHQENQKEERDPNPIDDVDGQKSKIDDVDGQKSKIDDVDGQKSKIDDVDGQKSKINDLDGQKSKPNVETMMETVDVVIDDDGGGSGDSNQETEAPQEEVEEQSDEPIVIEPDPSHSPMKKRTGSREYEGPMIKASCKRLKLDSKKNPSFKIFLKPAYAEKGVMVG 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0402 410 MobiDBLite consensus disorder prediction 359 376 - -
Lele42g0402 410 MobiDBLite consensus disorder prediction 338 352 - -
Lele42g0402 410 Pfam B3 DNA binding domain 124 215 IPR003340 GO:0003677
Lele42g0402 410 Pfam B3 DNA binding domain 32 106 IPR003340 GO:0003677
Lele42g0402 410 PANTHER B3 DOMAIN-CONTAINING 117 312 - -
Lele42g0402 410 CDD B3_DNA 123 214 IPR003340 GO:0003677
Lele42g0402 410 MobiDBLite consensus disorder prediction 244 376 - -
Lele42g0402 410 SMART B3_2 124 217 IPR003340 GO:0003677
Lele42g0402 410 SMART B3_2 21 110 IPR003340 GO:0003677
Lele42g0402 410 ProSiteProfiles B3 DNA-binding domain profile. 122 217 IPR003340 GO:0003677
Lele42g0402 410 Gene3D - 22 111 IPR015300 -
Lele42g0402 410 Gene3D - 117 219 IPR015300 -
Lele42g0402 410 SUPERFAMILY DNA-binding pseudobarrel domain 21 110 IPR015300 -
Lele42g0402 410 SUPERFAMILY DNA-binding pseudobarrel domain 118 219 IPR015300 -
Lele42g0402 410 MobiDBLite consensus disorder prediction 244 306 - -
Lele42g0402 410 CDD B3_DNA 32 107 IPR003340 GO:0003677
Lele42g0402 410 ProSiteProfiles B3 DNA-binding domain profile. 33 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0402 Lele-ChrLele42 3550098 3552722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0402 124 223 B3 DNA Binding Superfamily AT5G66980 33.010 8.58e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele42g0402 B3 5e-14 CL0405