Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0387 ATGATTTCGCATTCGGGTTGTCTCCAGTTTGTGTGCAGGGAAGAACAGAGCAAGTTTGATTTGATGGATACAAATTTAACCCCAAGATTGGGTCTTGAGTTTGAAAGTTTAGAAGAAGCGTGGCAATATTGGGTGAATTATGGCGGCAAAACCGGATTTGGTGTTAGAAAGCAATATTTCAGCAAGAGTAGGAAGGATGGTGCCATTACTTCATACAAATATGTGTGTTGCAAGGAAGGTGTACGAAGGCCCGATAAGAGAGATTATAAAACAATTCATCCTCGACCAGAGACAAGAACAGGATGTAAAGCGAGAATGACAGTATCACGCATAAATGGAAAATATAGAATTGTTGACTTCGTCGATGAGCACAATCACCCGCTTCATTTTCCAGAAACAGTGAATTTGAAAGCATCCCAACGGAAAGAGAATGAGGATGACAAAGATGTAAGGATCCGGGAATTGACTGCGGAGCTACTACGTGAGAGAAAGCGAAGAGCAGTTATTCAAAGCCAGCTTGAGATAATTTTGAGAGATGTAGAGGAACACTCCAATAAAGTATCAAAAAGCGTTATTGATGCTCTTCAGAGAGTGAAAGAGTTTGAAGAGAAAGGGAATAGCACCTCATCTTCCTCAAAGCTAGATGCTGCTAAATAA 657 0.4064 MISHSGCLQFVCREEQSKFDLMDTNLTPRLGLEFESLEEAWQYWVNYGGKTGFGVRKQYFSKSRKDGAITSYKYVCCKEGVRRPDKRDYKTIHPRPETRTGCKARMTVSRINGKYRIVDFVDEHNHPLHFPETVNLKASQRKENEDDKDVRIRELTAELLRERKRRAVIQSQLEIILRDVEEHSNKVSKSVIDALQRVKEFEEKGNSTSSSSKLDAAK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0387 218 Pfam FAR1 DNA-binding domain 43 129 IPR004330 -
Lele42g0387 218 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 14 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0387 Lele-ChrLele42 3398455 3401953 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele42g0387 FAR1 1.2e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0387 42 3398455 3401953 Lele44g0954 44 18299861 18302631 hybridization