Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0363 ATGAAAGCAAGCTGTCTTGCGTGCTCGAGCCGTGCGTTGATCCTTCGTAGACCTAAATCTTGTCCGAAGAGTCAATTCAATTCCAAACTAGTGCGTTTTGTTGAACTCGTTCATCTTCTTCTTGTTTTGGCGCTGGAAAATTCTGGACAATTCTCTTCTCTCATTCTGCTTTTCTTCATAATTGTTCATATATACTTACATACATATAACGCGAGAGTTCTAAAGGGAGAGAATTTGAAAGGGACATATAATTTTTCAATTATGGGGCCAAATGCAGGTTCATTGTCGGCGGCGGCAAAACGGGCGGAGGAACTTCGAATAGACGGCAATAATTACTTCAAGAAAGAGTGGTTCGGAGCTGCCATCGATGCCTATACGGGGGCAATTACTCTAATGCCCAACAATTCGGTTTATTTCACGAATCGTGCTCTATGGCATCGCAAGCGGAATGACTGGGCGAGAGTGGAGGAAGATTGTCGTAAAGCTATTCAACTTAATCACAAGTCAGTCAAGGCGCACTATATGTTGGTACTTGCTTTGCTGCAGAGGCAAGAATATGCCAAGGGAATAGCAGAATTACAGAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTAGCAAAAGCAAAATACCAAGATTGGGAACGTTCATCTACCAAGCGATCATGGGAATTGCAGAGCTTGGAAGAAGCTTGCGAGTCTGCTCTAAAGGAAAAGCATCTACATGGCGTTTCCCAAGGGGAAGGCGAAGACTTTGTAGTTGTAGATGAAGATCCAACCACCCCATCAGAACAGCTAGCGGCTTTAGGAAGAGTGTTTGGTAAAGCTGCAGAGGATGATACACCTACTGAGGTGCAAGATCACCTTTGCTGTAGAATCACACTCGAAATTTTCCGGGATCCCGTCATCACTCCGAGTGGTCTTACATATGAGAGGGCAGTGATTCTTGACCATCTTGAGAAGGTGGGTAGGTTTGATCCAGTCACCCGAGAACCACTTAACCCATCGCAGTTAGTACCAAACTTGGCCATAAAGGAAGCAGTCAAGTCATTCTTGGATGAACATGGATGGGCCTACAAGATAGATTAA 1122 0.4501 MKASCLACSSRALILRRPKSCPKSQFNSKLVRFVELVHLLLVLALENSGQFSSLILLFFIIVHIYLHTYNARVLKGENLKGTYNFSIMGPNAGSLSAAAKRAEELRIDGNNYFKKEWFGAAIDAYTGAITLMPNNSVYFTNRALWHRKRNDWARVEEDCRKAIQLNHKSVKAHYMLVLALLQRQEYAKGIAELQKALDLGRGANPKGYMVEEIWQELAKAKYQDWERSSTKRSWELQSLEEACESALKEKHLHGVSQGEGEDFVVVDEDPTTPSEQLAALGRVFGKAAEDDTPTEVQDHLCCRITLEIFRDPVITPSGLTYERAVILDHLEKVGRFDPVTREPLNPSQLVPNLAIKEAVKSFLDEHGWAYKID 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0363 373 CDD RING-Ubox_CHIP 296 362 IPR045202 -
Lele42g0363 373 SMART Ubox_2 299 362 IPR003613 GO:0004842|GO:0016567
Lele42g0363 373 Pfam U-box domain 298 368 IPR003613 GO:0004842|GO:0016567
Lele42g0363 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 90 371 IPR045200 GO:0000209|GO:0061630
Lele42g0363 373 SUPERFAMILY RING/U-box 288 370 - -
Lele42g0363 373 SMART tpr_5 136 169 IPR019734 GO:0005515
Lele42g0363 373 SMART tpr_5 102 135 IPR019734 GO:0005515
Lele42g0363 373 SMART tpr_5 170 203 IPR019734 GO:0005515
Lele42g0363 373 ProSiteProfiles U-box domain profile. 295 369 IPR003613 GO:0004842|GO:0016567
Lele42g0363 373 Gene3D Tetratricopeptide repeat domain 96 232 IPR011990 GO:0005515
Lele42g0363 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 372 IPR013083 -
Lele42g0363 373 ProSiteProfiles TPR repeat profile. 102 135 IPR019734 GO:0005515
Lele42g0363 373 SUPERFAMILY TPR-like 101 201 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0363 Lele-ChrLele42 3153175 3158267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0363 98 372 U-box Gene Family AT3G07370 65.091 3.48e-128 367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0363 42 3153175 3158267 Lele43g0994 43 18484760 18491523 hybridization
Lele42g0363 42 3153175 3158267 Lele44g0982 44 18570910 18575250 hybridization