Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0362 ATGGTAAAGTCTGGCGTGGTGGCGGTGGACTCTGATCCGATGGATGCGGCGGCGACCGCTACCGCGACCAAGGTGTTGGAGTTGAAGAAGGAGTTGAACGGATTGGTGAAGTCCATCGTCGACGATGATGATTGCAGGATTCAAATCATTGATCAAGCTAAGGAAGCTCTTTCTGCTCTTAAGGACCTCAAGCTCCGGAAGAGATCATCGTCATCACCATCTTCACAACAATCTTCGTCTTTCAAGCTGAACAGAAATTCCGCTTTTCCAGAAGAATTTAAGTGCCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTGAAATCTGGGAACAGAACTTGTCCTCAAACACAGCAAGTCCTCTCACACACTGTCCTCATTCCAAATCAACTCATAAGGGAGATGATAGAACAGTGGTATAAGAACCATGGGGTGGAATTATCCAACCAACTTCACTATATTTATAATGAGGAAGACATAATAACGAAAGGAGATTGCGATCAGTTTCATTCTCTGCTCGAGAAAATGTCCTCACCATTGCTTTCTGAGCAGAAAGCAGCCGCAAAGCAGCTTCGGTTATTGACGAAGAAGATGCCATTGTATAGAACACTCTTTGGTGAGACTCCACAAGCCATTTCTGAGATTCTCAAACCGATCTCCTCTGCAAGTGACTCTTTTAACAACACTCATCCTGATCTCCAAGAAGATGTGATCACAACACTTTTGAACATCTCAATCCATGACAACAACAAGAAGCTCGTCGCAGAAACACCCTCGGTGATTCCAATCCTTGTGAAAACCTTAAATTCAGGAACTATAGAAACTAGAAGCAATTCTGCAGCTACCCTTTTCACTTTATCCGCTCTAGACTCGAACAAGGAGCTTATAGGCAAATCTGGCTCCTTAAAGCCATTAATCGACCTCTTAGAAGAAGGCCATCCTTTAGCCATGAAAGATGTTGCTTCAGCAATCTTCACCTTGTGCGTGGTTCACGAGAACAAGGCAAGAGCAGTGAGGGAAGGGGCGGTGAGTGTTATACTGAGGAAGATCTCGAGCCGGGTCTATGTCGACGAATTGCTCACTATCCTCGCGCTGCTCTCGAGTCATCAAAAGGCTGTTCAGGACATGGTAGATGTTGGAGCTGTTCCTAACTTGCTGAGCATCATGAGGGAAACCAATTGCGACAGAAACAAGGAGAACTGCATTGCGATTCTTCAAACTATATGTCAGTATGACAGAGCAAAGTTGAAGGAGATGAAAGAAGAGGAGATTACCTTTAGAACTATCACTGATCTTGCGTTGAATGGAACTTCAAGGGCTAAGAGAAAGGCTAGTGGAATTCTTGAGCGGCTTAATAGGGTTGTTAATATTACACACACTGCATAA 1434 0.4414 MVKSGVVAVDSDPMDAAATATATKVLELKKELNGLVKSIVDDDDCRIQIIDQAKEALSALKDLKLRKRSSSSPSSQQSSSFKLNRNSAFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKSGNRTCPQTQQVLSHTVLIPNQLIREMIEQWYKNHGVELSNQLHYIYNEEDIITKGDCDQFHSLLEKMSSPLLSEQKAAAKQLRLLTKKMPLYRTLFGETPQAISEILKPISSASDSFNNTHPDLQEDVITTLLNISIHDNNKKLVAETPSVIPILVKTLNSGTIETRSNSAATLFTLSALDSNKELIGKSGSLKPLIDLLEEGHPLAMKDVASAIFTLCVVHENKARAVREGAVSVILRKISSRVYVDELLTILALLSSHQKAVQDMVDVGAVPNLLSIMRETNCDRNKENCIAILQTICQYDRAKLKEMKEEEITFRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0362 477 SUPERFAMILY RING/U-box 88 163 - -
Lele42g0362 477 ProSiteProfiles U-box domain profile. 88 162 IPR003613 GO:0004842|GO:0016567
Lele42g0362 477 CDD RING-Ubox_PUB 93 135 IPR045210 -
Lele42g0362 477 PANTHER U BOX DOMAIN-CONTAINING 51 467 - -
Lele42g0362 477 FunFam RING-type E3 ubiquitin transferase 88 162 - -
Lele42g0362 477 SMART Ubox_2 92 155 IPR003613 GO:0004842|GO:0016567
Lele42g0362 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 168 IPR013083 -
Lele42g0362 477 SUPERFAMILY ARM repeat 183 467 IPR016024 -
Lele42g0362 477 SMART arm_5 385 426 IPR000225 GO:0005515
Lele42g0362 477 SMART arm_5 305 345 IPR000225 GO:0005515
Lele42g0362 477 SMART arm_5 263 304 IPR000225 GO:0005515
Lele42g0362 477 Pfam U-box domain 90 159 IPR003613 GO:0004842|GO:0016567
Lele42g0362 477 Gene3D - 171 471 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0362 Lele-ChrLele42 3143403 3146055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0362 151 477 U-box Gene Family AT3G07360 58.610 6.26e-130 378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0362 42 3143403 3146055 Lele43g0995 43 18495234 18497808 hybridization
Lele42g0362 42 3143403 3146055 Lele44g0983 44 18580262 18582884 hybridization