Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0341 ATGGTAAGCTTGAGAAGGCGCAGACTTTTGGGGCTATGCTCAGGAAACAGTTCCTTTGTTACTCCACTTCCGCTATATTGTGAGAACCTCAACGCTTCTCAAGATTCAGCTCAGCGTGCTAAACCTAAGATCGCTCAATCTGACCATGGAATTGAAAGCATCCTTCATAATGTAGGAACTCAACTACTAAAAAATCCGATTGTTAAAGTGAAAGAAGAACCAGCTTCCTCAAATGTATCTGGTTCTAGCTCGTCAAAGGAGCAGTCTTGTCAGCAGTTTATTGGGCCTCCTATAAAACGCAGAAAGCCGCATAGGAGAAAGCATATTCATAGTCAAGAATCATGTGTAATGAGAGGTGTCTATTTTAAGAATATGAAGTGGCAGGCAGCAATTAAAGTGGACAAGAAACAGATCCATCTCGGAACTGTAAATTCTCAAGAAGAGGCTGCTCGTCTATATGACAGGGCTGCTTTCATGTGCGGGAGGGAGCCCAACTTTGAGCTTTCAGAAAAAGCGAAGCAAGAACTAAATAAATTGCAATGGGATGAGTTCTTGGCATTTACCAGACAATCAATTACCAGTAAAAAACACAGAAGAAGACTTGGCTCCCGACAGCGCAGTGAGTCTGACCCGCTTACGTTTCATGACGGGGACAGTCAGCAAGGCATCGATGCCACCTCAGCTTCTGAAGATGCTGATCTTGAAACATCGGACTCGTGA 720 0.4389 MVSLRRRRLLGLCSGNSSFVTPLPLYCENLNASQDSAQRAKPKIAQSDHGIESILHNVGTQLLKNPIVKVKEEPASSNVSGSSSSKEQSCQQFIGPPIKRRKPHRRKHIHSQESCVMRGVYFKNMKWQAAIKVDKKQIHLGTVNSQEEAARLYDRAAFMCGREPNFELSEKAKQELNKLQWDEFLAFTRQSITSKKHRRRLGSRQRSESDPLTFHDGDSQQGIDATSASEDADLETSDS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0341 239 MobiDBLite consensus disorder prediction 75 92 - -
Lele42g0341 239 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 200 - -
Lele42g0341 239 SMART rav1_2 118 173 IPR001471 GO:0003700|GO:0006355
Lele42g0341 239 MobiDBLite consensus disorder prediction 214 230 - -
Lele42g0341 239 SUPERFAMILY DNA-binding domain 116 161 IPR016177 GO:0003677
Lele42g0341 239 MobiDBLite consensus disorder prediction 195 239 - -
Lele42g0341 239 ProSiteProfiles AP2/ERF domain profile. 92 171 IPR001471 GO:0003700|GO:0006355
Lele42g0341 239 FunFam ethylene-responsive transcription factor-like protein At4g13040 117 168 - -
Lele42g0341 239 Gene3D AP2/ERF domain 117 169 IPR036955 GO:0003700|GO:0006355
Lele42g0341 239 MobiDBLite consensus disorder prediction 73 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0341 Lele-ChrLele42 2921036 2926459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0341 43 190 AP2-EREBP Transcription Factor Family AT1G51190 25.301 7.83e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele42g0341 AP2 8.7e-05 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0341 42 2921036 2926459 Lele43g1020 43 18773045 18777150 hybridization
Lele42g0341 42 2921036 2926459 Lele44g1001 44 18775519 18781636 hybridization