Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0333 ATGAGTACTCGTTCTGTTCGGGAGCATGCTTTCAGAAGTTACCGGCGAAGGAAGGCTGTTATGGATTTGGATCTTAATAGAGCTCCACCTGGTGAGAATCGGGAGCAAGAGGGACCTTCTATTCCACCGGAACCTCAGTTAGTTCAAGCTGTCCTGCAACCGCAAGATGTACAGCCTATTGATGTGGAGGCCATTGATGATGATGTTATTGAATGTACAGCAAGTGCTTTTGCTGAATGGGAGAACAATAAAAAGTCACCGAAACCTCCAATGGAGCCTGTCTTTAGCTGTCCAATATGTATGGGCCCATTTGTAGAAGAAGTGTCAACAAGGTGTGGTCATATATTCTGTAAGACTTGCATCAAGGCTGCTATAAGTGCACAGGGTAAATGCCCTACATGTAGGAAAAAGGTTACTGCAAAAGAGCTCATAAGGGTGTTTCTACCATCTACTATTTGA 459 0.4423 MSTRSVREHAFRSYRRRKAVMDLDLNRAPPGENREQEGPSIPPEPQLVQAVLQPQDVQPIDVEAIDDDVIECTASAFAEWENNKKSPKPPMEPVFSCPICMGPFVEEVSTRCGHIFCKTCIKAAISAQGKCPTCRKKVTAKELIRVFLPSTI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0333 152 SMART ring_2 97 134 IPR001841 -
Lele42g0333 152 ProSiteProfiles Zinc finger RING-type profile. 97 135 IPR001841 -
Lele42g0333 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Lele42g0333 152 Pfam Ring finger domain 96 135 IPR001841 -
Lele42g0333 152 ProSitePatterns Zinc finger RING-type signature. 112 121 IPR017907 -
Lele42g0333 152 PANTHER ELFLESS, ISOFORM B 1 83 - -
Lele42g0333 152 MobiDBLite consensus disorder prediction 21 45 - -
Lele42g0333 152 SUPERFAMILY RING/U-box 90 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0333 Lele-ChrLele42 2858590 2860683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0333 12 151 C3H Transcription Factor Family AT5G48655 42.786 7.32e-37 124