Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0293 ATGGGCAATTGTGGCACCAGAGAGGAATCCGCTGTTGTCTCCAATGCTCAAGTTCAACAGCTGCATATGTCGTCCTTGACTTCTAAAAGTGCTGCCAACGAGAAGAAGCATAATCGGTCTGTGTCAGATCTGAGCGACATTTCTACCCCGCGCCATAACTTCGAGGATGTCAGGAAGAATACACTACTCTATACTCATGTTATTGCTTTTACATTGTATGAGCTCGAAACTATTACTAAGAGTTTTCGCTCCGATTATATCCTCGGAGAAGGGGGCTTCGGCACTGTCTATAAAGGTTACATTGACGAGAATGTGAGAGTTGGCCTCAAATCCCTTCCTGTTGCTGTCAAGGTTCTAAACAAGGAGGGTCTTCAGGGACATCGCGAGTGGCTTACAGAAATCAATTTCCTGGGACAGCTTAGGCATCCTAATTTGGTTAAGTTGATCGGATACTGCTGCGAGGACGATCATAGGCTACTTGTATACGAGTTCATGTTTCGAGGAAGTTTAGAGAATCATCTATTCCGAAAGGCAACTGTTCCTTTATCATGGGCTACAAGAATGATGATTGCCCTTGGAGCTGCTAAGGGGCTTGCTTTTCTTCATAATGCTGAAAGGCCAGTAATCTATCGAGACTTCAAAACTTCTAATATATTATTGGACTCTGATTATACAGCGAAGCTTTCTGATTTTGGACTAGCAAAAGCTGGACCACAAGGTGATGAAACCCATGTGTCCACCAGGGTTATGGGTACCTATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACTGCAAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTTTTGGAACTTTTAACCGGAAGGAAATCTGTTGACAAAACAAGACCGGGTAAAGAACAAAGCTTGGTGGATTGGGCTAGGCCAAAGCTTAATGACAAGAGAAAGCTCCTGCAGATACTCGATCCTAGATTGGAAAACCAATACTCAGTGAGGGCAGCACAGAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAATCCCAAAGCCAGGCCGCTAATGCGTGACGTAGTTGAGACATTGGAACCTTTACAAAGTTGTAGCGATGGTGCTGGTGAGGTCTCATCATTGGGATCAAGTAATGCAGGTGGTGGTCCCTTTGCCATGACTGGAATCTCCGACTATCGGATGCGCCAGAGGTTTTCAAACAATGTTGGTCCAGGCGCTAGTTGTTGGTCTCCAAACCCAAACTGCTCACCAGGTGTCCCTCCAGCATGCAGGGTCAGATGA 1284 0.4548 MGNCGTREESAVVSNAQVQQLHMSSLTSKSAANEKKHNRSVSDLSDISTPRHNFEDVRKNTLLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEINFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQILDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMRDVVETLEPLQSCSDGAGEVSSLGSSNAGGGPFAMTGISDYRMRQRFSNNVGPGASCWSPNPNCSPGVPPACRVR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0293 427 MobiDBLite consensus disorder prediction 24 45 - -
Lele42g0293 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Lele42g0293 427 FunFam Probable serine/threonine-protein kinase PBL8 165 378 - -
Lele42g0293 427 Gene3D Phosphorylase Kinase; domain 1 42 164 - -
Lele42g0293 427 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0293 427 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Lele42g0293 427 FunFam Serine/threonine-protein kinase BIK1 48 164 - -
Lele42g0293 427 SUPERFAMILY Protein kinase-like (PK-like) 58 360 IPR011009 -
Lele42g0293 427 Pfam Protein tyrosine and serine/threonine kinase 87 359 IPR001245 GO:0004672|GO:0006468
Lele42g0293 427 PANTHER OS01G0588500 PROTEIN-RELATED 37 363 - -
Lele42g0293 427 Gene3D Transferase(Phosphotransferase) domain 1 165 372 - -
Lele42g0293 427 CDD STKc_IRAK 88 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0293 Lele-ChrLele42 2487914 2491354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0293 70 369 Glycoside Hydrolase AT3G07070 53.465 3.13e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele42g0293 PK_Tyr_Ser-Thr 6.6e-48 CL0016