LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g0281	ATGATTAGGGTTAGGGCAATCACGCGTATGGAAGCGTCACCCGACCCCGTCACTCCTCCGTTGACTTCCAGCTCCAATCGATACGGTATCCCATCTGCTTCTAATATTATTCAGGCGCCCTTGTCCTTGTTGTTGGAGCATTTAGGGATTCTTCGAAGCAGGTCTAATCAACAAGAGACTGAGCCCTTAATCAACAATAATCGACTCTCTTCTGGGTTCCGTGATGCTCTACGGAATCGCCTTGACGAGTCCGCCGTCATTCCTAATGACGGAGAGGTTTCAATTAGTATTATTGGGGCTGGGGAACAACGGCTTGACAGGGAAGGCGAAGTGAGGGAAGTTCTGTCTCAGAATGAAGTATCGATATCGGCGCAACCCTTGGCTGGGATGCCCTCTGCGACGCTTCCTTCTGCTTCGGGCGATCAGGAACGTTCGAGGACTGAGCATGTTGCGGAAGAGGGCGTTTCCCAATCTGTGAATGCAAATTCTGATGCAGAGGCTAGTGATGGAGTTGGGGCTAACGCTAGGGATTCTTCATCCCAGAGGTATGATATTCAGCAGGCTGCTCGCTGGATTGAGCAGGTCCTGCCTTTTTCTTTACTGTTGCTGGTCGTCTTCGTTCGGCAGCATTTGCAAGGTTTTTTTGTTACAATTTGGGTTACTGCTGTCCTTTTCAAGTCAAATGACATTTTGCGGAAGCAGACAGCTCTTAAGGGAGAGAGGAAAGTCCCTGTATTGATTGCCATTTCTATTGCATTTACATTGCACGTGGTTGGTGTATATTGGTGGTGTCAGAATAACGATATGCTATACCCATTGGCTATGCTTCCTCCCAAAGTCATACCTCCATTCTGGCATGTTATTTTCATCATCACAGTGAATGATGCTTTGGTCCGGCAAGCAGGAATGGTATTCAAGTGTGTTTTGTTGATGTATTACAAGAATGGCAGAGGCCGAAATTATCTTAAGCAGGGCCAAATGCTGACTCTAGTTGAGTACCTACTCCTTCTTTACCGTGCCTTGTTGCCAACTCCAGTATGGTATCGGTTCTTCTTGAACAAAGAATATGGGAGTTTCTTTTCTTCATTGATGACTGGATTATATCTAACTTTTAAGCTGACATCAGTCATCGAAAAGTTGCAATCCTTCTTTGCTTCGGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAACAGGTGAATGCCGTTGGTGATCTCTGTGCTATTTGCCAAGAAAAGATGCATACCCCTATCTTACTTTCTTGTAATCACATCTTCTGCGAAGAATGTGTATCAGAATGGTTTGAGAGAGAAAGGACTTGTCCCTTGTGCAGGGCTTTGGTGAAACCTGCTGGGCTTAAATCATTTGGGGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTAA	1425	0.4554	MIRVRAITRMEASPDPVTPPLTSSSNRYGIPSASNIIQAPLSLLLEHLGILRSRSNQQETEPLINNNRLSSGFRDALRNRLDESAVIPNDGEVSISIIGAGEQRLDREGEVREVLSQNEVSISAQPLAGMPSATLPSASGDQERSRTEHVAEEGVSQSVNANSDAEASDGVGANARDSSSQRYDIQQAARWIEQVLPFSLLLLVVFVRQHLQGFFVTIWVTAVLFKSNDILRKQTALKGERKVPVLIAISIAFTLHVVGVYWWCQNNDMLYPLAMLPPKVIPPFWHVIFIITVNDALVRQAGMVFKCVLLMYYKNGRGRNYLKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKLQSFFASVKALSRKEVHYGAYATSEQVNAVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPAGLKSFGDGSTSLFFQLF	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g0281	474	MobiDBLite	consensus disorder prediction	1	24	-	-
	Lele42g0281	474	ProSitePatterns	Zinc finger RING-type signature.	428	437	IPR017907	-
	Lele42g0281	474	PANTHER	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	25	474	IPR044235	GO:0061630\|GO:1904294
	Lele42g0281	474	ProSiteProfiles	Zinc finger RING-type profile.	413	451	IPR001841	-
	Lele42g0281	474	MobiDBLite	consensus disorder prediction	126	176	-	-
	Lele42g0281	474	Pfam	Zinc finger, C3HC4 type (RING finger)	411	454	-	-
	Lele42g0281	474	MobiDBLite	consensus disorder prediction	152	176	-	-
	Lele42g0281	474	CDD	RING-HC_RNFT1_like	412	451	-	-
	Lele42g0281	474	SMART	ring_2	413	450	IPR001841	-
	Lele42g0281	474	MobiDBLite	consensus disorder prediction	126	141	-	-
	Lele42g0281	474	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	388	458	IPR013083	-
	Lele42g0281	474	SUPERFAMILY	RING/U-box	405	456	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g0281	Lele-ChrLele42	2409068	2413265	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g0281	24	474	C3H Transcription Factor Family	AT5G01960	65.284	0.0	592