Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0277 ATGTCTGGTTTGTATAATCCGAACTTCTCTCACGCTAGAGCGGCTTCTCCTCAGATTAGAAGTACCCCGGATGTCGATAGTCAGTACTTGTCGGAGTTGTTAGCAGAGCATCAGAAGCTTGGACCCTTCATTCAAGCCCTTCCGATATGCAGTCGACTGTTAAATCAAGAAATATTGAGAGTTTCTGGAATGATGTCCAACCAAAATTTTGGTGATTTTGACAGACTGCGGAATAGAAGCCCGAGTCCTATGGCTTCTTCAAATCTCATGTCAAATGTCACTGGGACTGGATTAGGTGGCTGGAATCCCCAGGAGAGATTTTGTGGACCGACTGGAATGACGATGGACTGGCAAGGTGGCGCACCCGCGAGTCCTAGTTCGATCACTGTTAAGAGGATCTTGCGATTGGAAATTCCAGTAGATACATACCCCAATTTCAACTTTGTGGGAAGACTTCTGGGGCCTAGAGGCAACTCTCTGAAACGTGTAGAAGTTAGTACAGGATGCCGTGTGTATATTAGAGGAAAAGGATCGATAAAGGATCCAGACAAGGAAGAGAAATTAAGAGGAAGACCAGGCTATGAACATCTCAATGAACCGCTGCACATTTTGATCGAGGCTGATTTACCTGCAAGTATTGTTGACTTAAGGCTTAGACAGGCACAGGAAATTATAGAAGAATTGCTCAAACCCGTGGATGAGTCCCAAGACTACATTAAGAGGCAGCAGTTGCGTGAACTAGCTATGCTGAATTCAAATTTCAGAGAAGAGAGTCCCGGACCAAGTGGTAGTGTATCTCCATTCAATTCTAGTGGAATGAAACGTGCAAAAACAGGGTCTGAGAAGTTTTGTGAGTTTACTAGTACTCCATCATTAAACCCTCCACTCATTGCTCCAAGATTCCGTCCATACAATACGGTCATTTACAGAGTCCGAGAAAAGCATCTATCTTTTTTGTGCATTTGTGGGTTTCTGATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCCGATCAATATAAATCAGCTCAGGGTCAGTGGTTGATGCAACATCAACCTTCCATGAAGCAAATCATGGCAATTATGGCCGAAAGAGATGCAGCCATTCAAGAGAGAAATCTAGCACTTTCTGAAAAAAAGGCGGCCCTTGCAGAGCGTGATATGGCATTCGTGCAACGAGATACTGCCATCGCGGAACGGAATAATGCCATTATGGAACGAGATAATGCTATTGCTACCCTTCAGTATCGAGAGAACTCCTTAGCCAATGGTAGCATGTCTTGTCCTCCAGGATTCCAAATTTCCCGAGGTGTCAAGCATGTGCATCATCCTCAGCAACAAGTACACCATTTACCTCATATGGGTGAAACTTCTTACAGCACACGGGAAATGCACACTGGTGATGACCTTCCGACCGTATCCATGCCTAATGAAGCAGGGAAATCACGGCGGGCTAAGCGACCAAAGGATGGTAAGTCAATTTCACCTGGCAAGAAGACACCAAGAGCTGCAAAAAAGCTCAAGAGGGAGGGTGAAGACTTAAATAAGATGATGTTTGGCAAGGCACATGAATGGAAGAGTGGTCAGGAAATGGTTAATGGAGGTGATGATCTTAACAAGCGGTTAGGCTCATCAAAGGCAGATTGGAAAGGTCAAGACTTGGGGTTGAACCAGGTAGTATATGATGAGTCAACAATGCCAGCACCTGTGTGCTCTTGCACTGGTCTTCTGAAACAGTGCTACAAATGGGGGAATGGAGGCTGGCAGTCTGCTTGTTGCACAACAACTCTATCAATGTATCCACTTCCAGCAGTGCCCAACAAGAGGCATGCTAGGGTTGGTGGACGAAAGATGAGTGGAGGCGCTTTCAATAAGCTTCTTAGCCGACTTGCAGCAGAGGGCCATGATCTGTCAAACCCAGTTGACCTGAAAGACCACTGGGCTAAACATGGCACAAACCGTTATATCACGATCAAGTAG 1986 0.4562 MSGLYNPNFSHARAASPQIRSTPDVDSQYLSELLAEHQKLGPFIQALPICSRLLNQEILRVSGMMSNQNFGDFDRLRNRSPSPMASSNLMSNVTGTGLGGWNPQERFCGPTGMTMDWQGGAPASPSSITVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVSTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPASIVDLRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGSEKFCEFTSTPSLNPPLIAPRFRPYNTVIYRVREKHLSFLCICGFLMDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAFVQRDTAIAERNNAIMERDNAIATLQYRENSLANGSMSCPPGFQISRGVKHVHHPQQQVHHLPHMGETSYSTREMHTGDDLPTVSMPNEAGKSRRAKRPKDGKSISPGKKTPRAAKKLKREGEDLNKMMFGKAHEWKSGQEMVNGGDDLNKRLGSSKADWKGQDLGLNQVVYDESTMPAPVCSCTGLLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0277 661 MobiDBLite consensus disorder prediction 482 498 - -
Lele42g0277 661 Gene3D K Homology domain, type 1 19 261 IPR036612 GO:0003723
Lele42g0277 661 MobiDBLite consensus disorder prediction 461 513 - -
Lele42g0277 661 MobiDBLite consensus disorder prediction 255 274 - -
Lele42g0277 661 SMART kh_6 130 230 IPR004087 GO:0003676
Lele42g0277 661 SMART GAGA_bind_2 326 661 IPR010409 -
Lele42g0277 661 Pfam GAGA binding protein-like family 326 661 IPR010409 -
Lele42g0277 661 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Lele42g0277 661 MobiDBLite consensus disorder prediction 254 274 - -
Lele42g0277 661 PANTHER - 326 661 IPR010409 -
Lele42g0277 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 137 255 IPR036612 GO:0003723
Lele42g0277 661 CDD SF1_like-KH 135 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0277 Lele-ChrLele42 2352877 2364707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0277 390 661 BBR or BPC Transcription factor family AT5G42520 63.699 1.59e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Lele42g0277 GAGA_bind 2.1e-106 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0277 42 2352877 2364707 Lele37g1412 37 22844865 22849540 CCT
Lele42g0277 42 2352877 2364707 Lele38g1289 38 23635398 23640125 CCT
Lele42g0277 42 2352877 2364707 Lele39g0012 39 96635 101248 CCT
Lele42g0277 42 2352877 2364707 Lele40g1236 40 22136749 22141407 CCT
Lele42g0277 42 2352877 2364707 Lele42g0277 42 2352877 2364707 ECH
Lele42g0277 42 2352877 2364707 Lele43g1087 43 19296658 19302052 hybridization
Lele42g0277 42 2352877 2364707 Lele44g1071 44 19419106 19420380 hybridization