Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0245 ATGGAAGCTGATGAATTGAGTTTGAAAATGGTGTCACGAACTTGCATGAATGCGGCTTGTGCCACCTCGACGTCGGTTCAGTGGCGGAAAGGATGGGCCCTGAGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGCTCTGTTTATGAGCAATCAACATTTTGCTATGTGTTCCACTCAAAAGATTCTGGTTGGAGGGAGTGCGTTTCATGTGGCAAGCGTCTTCATTGTGGATGTGTTGCTTCTCGAAATTTGCTTGAGCTGCTAGATATTGGTGGTGTAAGCTGCATAAATTGTGCAAGAGATTCAGGACAACCTAGTTCAACTAGGGAAAAACCTGATGGATCTGGTACATCAAAGGCTGAAATTGGAAGTGAACTACAATGCTCATTGGTTTCTAACCAATTCAAAGGAAGCAATGTTGAGAAAGTGAGAGGGGTGCGAGTTGGGGATTATGCAGGGAATGATGGGCTTAGGAGTTGGCTCCAACCTCATAATGGTCCTACAAATGTGCCTTCTATGCGATTAAAACAAGAAGTTATGCCTTTTATTGGGGAACTTGGAAGCACTTCAATATCACAATTCCATCCAGAGTCTAATGGATCATCTAAGGCTGTCAAAGTTGACAATTGCAAGACAGATGTAGAAATGAGAGATATGTATGAATCATTTGCTCAAACAAATTTGAGTATGACTCTTGGCGCACCTTTAGGGAATTCAAACTCCTTTAGTAATGATGTTTTTGATGAGAGGGAGCATGGTAAGACATCATCTTCAACATTAGCAGGGCCCAGATCTCGCCATCTCTTACCCAAGCCCCCTAGGTCAACCCTCACCACAGGTTTGGAGGCAAATGCAGGGATGGTATCTCAAATTCGTGTTGCCAGGCCACCTGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCCCGTTATTGGCCTAGGATCACTGATCAAGAGTTGCAGCAAATCTCTGGAGATTCAAATTCAATCATTGTGCCGTTGTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAGGCTTGTGCTGAAACATATTTTCCTCCTATCTCTCAGCCAGAGGGCCTTCCCTTACGAATTCAAGATGTGAAAGGAAAAGAATGGGTATTCCAATTTAGATTCTGGCCAAACAATAACAGCAGAATGTATGTTCTAGAAGGGGTAACTCCCTGCATTCAGTCTATGCAGTTGCAAGCTGGGGATACTGTGACATTTAGTCGTATGGACCCTGAGGGAAAACTTATAATGGGGTTTCGGAAAGCTACAAATTCTGCTTCTGTACAGGAATCTCATCCATCTAATATTCCCAACGGCAATCGTTCAAGTGAAACTTCCTATCCTGGTGTTTATGAGAATTTACCTGTATTAAGTGGCTACTCTGGCCTTCTACAGTCATTAAAAGGAAGTTCAGAAACCCACCTAAATGCGCTGTCTAAAAAATGGAATTCAGCTTGTGGAGACATGAATTGGCATAATATTGAGATGCCTGAAAGCAGGAAAAGAGAAGGATTGCTTCTGCCACCAGCGCTGGTTCCAGAGAAGAAAAAGACTCGTAATATTGGACCAAAAAGCAAGAGACTGCTTATTGACAGCCAGGATGCGCTGGAGCTGAAACTAACCTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCTCCAGCAGTTAAGCCAAGCATTGTCATGATTGAAGATCATGTATTTGAAGAATATGAAGAGCCTCCTATCTTCGGGAAGAGAAGTATATTTGTAGCCCGGTCGACTGGGATGCATGAACAATGGACTCAATGTGATAGTTGCTCAAAATGGCGAAAGTTGCCTGTGGACGTACTTGTTCCCCCTAAGTGGACATGCGGAGACAATTCATGGGATCAGAGCAGGTGTTCATGTTCTGCCCCCAATGAGCTCACACCAAGGGATCTAGATAATCTTCTGAGATTAAATAAGGAATTCAAGAAACAAAGAATGGCGGCTAGCCACAGGCTGTCCCTGGAGCAGCATGAATCTTCTGGACTGGATGCTTTGGCTAATGCTGCAATACTTGGAGACGATCCCGGTGACTCTAGCAGGACACCGGTTGCTACCACAACAAAACACCCTCGGCATAGACCTGGTTGCTCCTGCATTGTGTGCATCCAGCCACCCAGTGGAAAGGGAAAACACAAACCTACATGCACCTGCAATGTATGCATGACAGTTAAACGTCGGTTCAAGACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGCAATCATGTGGGCCAAGGGATGAATCAGAAGTAGAAAGCACTTCTAGAAATTTAACTCCAGCTGATGGTTCTGAGACTGAAGCAAGGGTACCAAATGAGTTGGACTTAAAAAGTCAAACGGACGCGGCTGAAACTAGCAAGGGACAGTTAGACTTGAATTCTGATCCCGATCGAAATGACACGCAGGGTGGCTCAAACAGTGTCAGCATGATGAGTCTACTTCAAGAGGCAAGTCTCCCTTTGGAGACATATCTGAAGCAAAATGGTCTTACTAGCTTGGTATCAGAGCAACAAGCAGCAAATTCAGCTTCCAATGGGCAGGCGCAAACTATGAACAACGAGAGCGAGGTAAGACACGACGAGGATTGTTGTGCTGCTTCTGATGTTAAGGAGCAAGAAAGCAGTCATGAAGAGAACAGTGGTCAAGACAAAAGCGAAAACAATCCCCCTTCTTGA 2775 0.4497 MEADELSLKMVSRTCMNAACATSTSVQWRKGWALRSGEFADLCDKCGSVYEQSTFCYVFHSKDSGWRECVSCGKRLHCGCVASRNLLELLDIGGVSCINCARDSGQPSSTREKPDGSGTSKAEIGSELQCSLVSNQFKGSNVEKVRGVRVGDYAGNDGLRSWLQPHNGPTNVPSMRLKQEVMPFIGELGSTSISQFHPESNGSSKAVKVDNCKTDVEMRDMYESFAQTNLSMTLGAPLGNSNSFSNDVFDEREHGKTSSSTLAGPRSRHLLPKPPRSTLTTGLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSIIVPLFEKMLSASDAGRIGRLVLPKACAETYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQESHPSNIPNGNRSSETSYPGVYENLPVLSGYSGLLQSLKGSSETHLNALSKKWNSACGDMNWHNIEMPESRKREGLLLPPALVPEKKKTRNIGPKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDHVFEEYEEPPIFGKRSIFVARSTGMHEQWTQCDSCSKWRKLPVDVLVPPKWTCGDNSWDQSRCSCSAPNELTPRDLDNLLRLNKEFKKQRMAASHRLSLEQHESSGLDALANAAILGDDPGDSSRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSCGPRDESEVESTSRNLTPADGSETEARVPNELDLKSQTDAAETSKGQLDLNSDPDRNDTQGGSNSVSMMSLLQEASLPLETYLKQNGLTSLVSEQQAANSASNGQAQTMNNESEVRHDEDCCAASDVKEQESSHEENSGQDKSENNPPS 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0245 924 MobiDBLite consensus disorder prediction 245 281 - -
Lele42g0245 924 SMART B3_2 336 436 IPR003340 GO:0003677
Lele42g0245 924 CDD B3_DNA 334 435 IPR003340 GO:0003677
Lele42g0245 924 MobiDBLite consensus disorder prediction 869 886 - -
Lele42g0245 924 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Lele42g0245 924 Gene3D - 604 660 - -
Lele42g0245 924 Gene3D - 314 441 IPR015300 -
Lele42g0245 924 MobiDBLite consensus disorder prediction 692 715 - -
Lele42g0245 924 MobiDBLite consensus disorder prediction 754 840 - -
Lele42g0245 924 ProSiteProfiles Zinc finger CW-type profile. 601 651 IPR011124 GO:0008270
Lele42g0245 924 MobiDBLite consensus disorder prediction 811 840 - -
Lele42g0245 924 MobiDBLite consensus disorder prediction 103 122 - -
Lele42g0245 924 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 874 - -
Lele42g0245 924 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Lele42g0245 924 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Lele42g0245 924 Pfam CW-type Zinc Finger 606 648 IPR011124 GO:0008270
Lele42g0245 924 MobiDBLite consensus disorder prediction 768 795 - -
Lele42g0245 924 MobiDBLite consensus disorder prediction 887 916 - -
Lele42g0245 924 MobiDBLite consensus disorder prediction 869 924 - -
Lele42g0245 924 SUPERFAMILY DNA-binding pseudobarrel domain 334 435 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0245 Lele-ChrLele42 2121842 2127970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0245 13 877 B3 DNA Binding Superfamily AT4G32010 50.922 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele42g0245 B3 3.1e-15 CL0405