Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0243 ATGCATCGCCGACTACTCGACGCTGGGTTCACTGTGGCTCCGGCATATGGGAATAAGACCCGCGAATCGTTCGTGGGCGATGTGAACTTCGACGCGAACATGGTGATCATATTGGCGGCTTTGTTGTGCGCATTGATATGCGCGCTTGGATTGAACACGATAGTGCGATGTGTGTTGCGATGTAGCCAAAGATTTTCCACAGAGACCACAGAACAAACAGCTGCTAGGCTTGCCTCAATGGGCCTGAAGAAACGTCACCTGAGCCAGATTCCGGTGAAAGAATACGGACCCGGTGCGAATATTCCGGCGACGGAGTGCCCCATATGCCTTGGGGAGTTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGCAATCACGGATTCCATGTGAGGTGCATCGACACATGGCTTTTGTCACATTCTTCTTGCCCAAACTGTCGTCATTCGCTGCTAGAGAAATCCACAAATCCAAATTCAAATTCGAATAGGAGGATTGGAGGAGAAGAAGTCGCCGGAGCTCAGGTTCCGTCAGATGGATCCGGCAACTTGCAAGTTCCCGCTGTGGTGGTCGACGAGCAGGCAAGTTGA 591 0.5161 MHRRLLDAGFTVAPAYGNKTRESFVGDVNFDANMVIILAALLCALICALGLNTIVRCVLRCSQRFSTETTEQTAARLASMGLKKRHLSQIPVKEYGPGANIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEKSTNPNSNSNRRIGGEEVAGAQVPSDGSGNLQVPAVVVDEQAS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0243 196 Pfam Ring finger domain 105 148 IPR001841 -
Lele42g0243 196 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lele42g0243 196 SMART ring_2 106 147 IPR001841 -
Lele42g0243 196 CDD RING-H2_EL5_like 105 148 - -
Lele42g0243 196 SUPERFAMILY RING/U-box 90 157 - -
Lele42g0243 196 PANTHER RING-H2 FINGER PROTEIN ATL78 24 161 IPR044602 GO:0016567|GO:0016740
Lele42g0243 196 MobiDBLite consensus disorder prediction 154 196 - -
Lele42g0243 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0243 Lele-ChrLele42 2106527 2107117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0243 4 164 C3H Transcription Factor Family AT3G10910 57.059 1.04e-58 180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0243 42 2106527 2107117 Lele42g0243 42 2106527 2107117 ECH
Lele42g0243 42 2106527 2107117 Lele43g1116 43 19539486 19540082 hybridization
Lele42g0243 42 2106527 2107117 Lele44g1102 44 19661860 19662450 hybridization