Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0237 ATGAGATTAGGAGGCATGGGGGTGGCTCAGATTCATTACGTTGAAACAGACACATCTGGACGATATGGACGATTCAGGGATGTTTTGGGGAAAGGGGCGATGAAGATTGTGTACAAAGCATTTGATGAAGTGTTAGGAATTGAAGTGGCATGGAACCAAGTGAAGCTTGGAGACGTGTTTCATTCCCCAGATGAACTTCAACGCCTTTATTCAGAGGTTCATCTTCTCAAGAACCTTGATCATCCCTCTATCATGACCTTCCATGCTTCATGGATCGATGTCCACCACAGAACCTTCAACTTCATCACCGAACTCTTCACCTCCGGCACCCTCCGAGAGTATAGGAAGAAGTACCGTAGAGTAGATATTCGAGCAGTGAAGAACTGGGCTCGTCAAGTTCTTAGTGGTTTGGAGTATTTGCACTGCCATGATCCTCCTGTAATTCATAGAGATCTCAAGTGTGATAATATCTTTGTCAATGGCCATCTGGGGCAGGTCAAGATCGGCGATTTAGGCCTCGCCGCCATCCTCCGCGGTTCTCAACGTGCCCACAGTACACCTGAATTCATGGCTCCAGAACTGTATGAAGAGGAATACAATGAACTTGTTGATATATACTCCTTTGGGATGTGTATGATTGAGATGCTTACCTCTGAGTTTCCATACAGCGAGTGCTCCAACCCAGCACAAATTTACAAGAAAGTCACTTCAGGGAAGCTACCTGATGCATTTTACAGAATCCAAGATTTGGAAGCACAGAGATTCGTGGGGAAATGTTTGGCAAATGTATCGAAGAGATTGCCGGCAAAGGAACTCTTGTTGGATCCCTTTTTAGCGATGGTCCAACTCGAATCACCACCACCACCACCACCGTGCCTGCTATCACCAAAGATTCCAACTCATTACAAGTCCAATTCCAATTCAGTAGTTGCCAGCAAGGGGCATTCTTCCATGGCTGGTCATCAAACAAAGAGCACAAACATGACAATAACAGGGACAATGAATGAGGAAGATGACACAGTTTTCCTTAAAGTACAAATATCCGACAAAAATGGGCATGTTAGGAACATATACTTCCCCTTTGACACCATAAATGACACTGCAATGGACGTGGCGATTGAGATGGTTAGGGAATTGGAAATAAACGATTTGGAGCCATTGGAGATAGCTCAAATGATAGAGGAAGAGATATTAGCTCTGGTTCCAACTTGGAAGGATTGGGGCACCACTTCTCAGTGTCCACGTCAGCACAGCTTTAGATATGAAGAAGAAGAAGAAGAAGAAGATGATGATGATCTCAGCAACCACCATCCTTTTTTCTCATCTTCTACTTCACGATCTTCCTCTCATGGTTCTCTCCCAATGCTCAGCTTCTCTAGCAAAACCCTCTTTGGTGGGAACAATAACCATTTCTCACTTCCTCAGGATTGGCTTCAAGATAATGATGGCTTTCTCGATGATGCAAGCTCGGAAAGCTCTATGAATTCCTTAAAGTATGCTCACATGAATCACTGCGACGCGGGCATCGAAGATAATGGGCATGACGCAAATTGCAAGTGCTCAAGATTCTGTCCTGCACAAGAGATGGAAGCCAATTACAGTAATAAGCAGATGATCAGCTATCGAAGAACAACAGAGTGCTGCCGGAGATGCGGTGATCAACTGCCGGCGACGAGCATGACGAGGATGCGGTCATATGTGGATGTGAGGAGCCAGCAATTGCAGAGATCGTTACTGGAGGAGATCCATAAGAGAAGGATGTCGAAGACAGTAGAGGCCATTGAGAACATTGGCTTTCAGGATCCCACAGCCACATGGAGGTCTGGTTGTTAA 1833 0.4534 MRLGGMGVAQIHYVETDTSGRYGRFRDVLGKGAMKIVYKAFDEVLGIEVAWNQVKLGDVFHSPDELQRLYSEVHLLKNLDHPSIMTFHASWIDVHHRTFNFITELFTSGTLREYRKKYRRVDIRAVKNWARQVLSGLEYLHCHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQRAHSTPEFMAPELYEEEYNELVDIYSFGMCMIEMLTSEFPYSECSNPAQIYKKVTSGKLPDAFYRIQDLEAQRFVGKCLANVSKRLPAKELLLDPFLAMVQLESPPPPPPCLLSPKIPTHYKSNSNSVVASKGHSSMAGHQTKSTNMTITGTMNEEDDTVFLKVQISDKNGHVRNIYFPFDTINDTAMDVAIEMVRELEINDLEPLEIAQMIEEEILALVPTWKDWGTTSQCPRQHSFRYEEEEEEEDDDDLSNHHPFFSSSTSRSSSHGSLPMLSFSSKTLFGGNNNHFSLPQDWLQDNDGFLDDASSESSMNSLKYAHMNHCDAGIEDNGHDANCKCSRFCPAQEMEANYSNKQMISYRRTTECCRRCGDQLPATSMTRMRSYVDVRSQQLQRSLLEEIHKRRMSKTVEAIENIGFQDPTATWRSGC 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0237 610 CDD STKc_WNK 21 278 - -
Lele42g0237 610 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Lele42g0237 610 Gene3D Transferase(Phosphotransferase) domain 1 106 282 - -
Lele42g0237 610 FunFam Probable serine/threonine-protein kinase WNK1 8 104 - -
Lele42g0237 610 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0237 610 SUPERFAMILY Protein kinase-like (PK-like) 25 321 IPR011009 -
Lele42g0237 610 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0237 610 MobiDBLite consensus disorder prediction 437 452 - -
Lele42g0237 610 FunFam probable serine/threonine-protein kinase WNK9 106 283 - -
Lele42g0237 610 MobiDBLite consensus disorder prediction 415 452 - -
Lele42g0237 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lele42g0237 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 557 - -
Lele42g0237 610 Pfam Protein kinase domain 27 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0237 Lele-ChrLele42 2032521 2036585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0237 1 429 MAP Kinase Kinase Kinase AT3G51630 66.435 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lele42g0237 Pkinase 9.5e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0237 42 2032521 2036585 Lele42g0237 42 2032521 2036585 ECH
Lele42g0237 42 2032521 2036585 Lele43g1123 43 19607391 19608551 hybridization
Lele42g0237 42 2032521 2036585 Lele44g1109 44 19731163 19733037 hybridization